Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2390 ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAACGTGAAGAGAGGTCCATGGTCGCCTGAAGAAGACGCCAAACTCAAATCTTACATCGAAGACCACGGCACAGGTGGCAACTGGATAGCTTTGCCCCAGAAAATAGGTCTGAAAAGGTGCGGCAAAAGTTGTCGTCTCAGATGGCTGAACTATCTTCGCCCAAACATCAAACATGGGGGTTTCTCAGAAGAAGAAGACAACATAATTTGCAGCCTCTATGTTAACATTGGAAGCAGGTGGTCAATTATAGCAGCGCAATTACCAGGGCGCACGGATAATGACATAAAGAACTATTGGAACACTAAGCTGAAGAAGAAGCTACTGGGGAAGCAAAGGAAGGAGCAACACGCTCATGCTCGAAGAGTTGGTGGCCTAAAGCAAGAGATCAAGAGGGAGAGTGAAGATTTGATGTTACCTGTGGGAGTTATTAGCCGAACTCCTTGTTGGCCACATGAACAGAATTCTTGGCCCATTCCAGTGGCAAATGCTTGCCTCCAATACTATGATCTCAACAACAAAACATCATCCATCGTACACATCCCTGACAACACAGTCACTGCCACCATGAACTCACAATACTCATCATTTGACATTTCCTTAACACAAGACCAGCTCTATCCCTCCACAGGTAACATGATCACCACAGACACATGTCACACATCGAATGTGTTTCAAGGGTTTGGGAACTTCTCCAGTGATTTTGCCTGTGTCAACTCGCAACAAATGGATGGATCAGAACTGGTTTTTTATGGAATGGAGTCAATGGAAATTGCCAATGGTAGCACAAACACGAATTCAACAGAAAGCACAAGTTGGGGAGATATAATTAGCTCTATGGTTTACCCGCCTTTGGTTTCTCACTACGAAGCTTGCCAACAGAGAATAATGCCTCAAGATGTTACTTTCGAGGAGTCAAGTTACTTCGCAATGCGAACGCAATAA 972 0.4496 MGRAPCCDKANVKRGPWSPEEDAKLKSYIEDHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYVNIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKKLLGKQRKEQHAHARRVGGLKQEIKRESEDLMLPVGVISRTPCWPHEQNSWPIPVANACLQYYDLNNKTSSIVHIPDNTVTATMNSQYSSFDISLTQDQLYPSTGNMITTDTCHTSNVFQGFGNFSSDFACVNSQQMDGSELVFYGMESMEIANGSTNTNSTESTSWGDIISSMVYPPLVSHYEACQQRIMPQDVTFEESSYFAMRTQ* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2390 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pvu3g2390 323 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pvu3g2390 323 Gene3D - 7 68 - -
Pvu3g2390 323 CDD SANT 16 62 IPR001005 -
Pvu3g2390 323 CDD SANT 71 111 IPR001005 -
Pvu3g2390 323 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pvu3g2390 323 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pvu3g2390 323 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pvu3g2390 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pvu3g2390 323 Gene3D - 70 141 - -
Pvu3g2390 323 PANTHER TRANSCRIPTION FACTOR RAX3-LIKE 1 306 - -
Pvu3g2390 323 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pvu3g2390 323 PANTHER OS09G0431300 PROTEIN 1 306 - -
Pvu3g2390 323 SMART sant 13 64 IPR001005 -
Pvu3g2390 323 SMART sant 67 115 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2390 Pvu-Chr3 45418410 45419954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2390 1 291 MYB Transcription Factor Family AT3G49690 49.845 7.27e-87 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g2390 Myb_DNA-binding 7.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2390 K09422 - gmx:100792374 493.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0090 2 1000586 1002289 Pvu3g2390 3 45418410 45419954 PCT