Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2387 ATGATGGGTCTTCATCAGGATCCCAGCGACTCAGGCCTTCAGCTTATTCTAGGATTGGCTTTGACTGCCACCCCAGAAGACACCATCACTCCGTCACCACCATCCATTTCCAACAACCTTCATCATCATCATCTTACAACTCTTAGGCCAAACTCCTATTCCTCCAAATCCAGTTTCATCTCTACAAGTAACTCCGAGCCTGAGCCATCACTAACGTTGGGCCTGTCCCGCGAGACATACCGGCAGCAGGTGGTCAAACTTCCCAGAAACATAGGACACAACAAAGTCTCCTCTGAGGACCCTCTTGAACAGACTTCACCTCACAGTGCTATCTCCTCCTTCTCCAGCGGAAGGGTCAAGAGGGAGAGGGATCTTAGCTGTGAAGAAGCGGATGCAACAGAGACGGAGAGGGTTTCTTCAAGAGCCAGCGACGAAGAAGAGGACGGCACCACCGCCAGGAAGAAACTCAGGCTTACCAAAGAACAATCCGCCTTGCTTGAAGAAAGCTTCAAACAACACAGCACCCTCAATCCTAAACAGAAGCAAGCTTTGGCCAAGCAGTTAAGTCTTCGGCCTCGACAAGTGGAAGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAAACAGAGGTGGACTGCGAGTTCCTAAAAAAGTGTTGTGAAACATTAACAGACGAGAACAGAAGGTTGCAGAAGGAGCTGCAAGAGCTGAAGGCACTGAAACTGGCTCAGCCCTTGTACATGCCTATGTCTGCGGCAACCCTCACCATGTGTCCCGCCTGTGAGAGGCTCGGTGGCGGCGTCGGCGGTGGCGCTTCCGCTAAGTCACCCTTCTCAATGGCTCCTAAACCGCACTTCTTCAACCCCTTCGCCAATCCTTCTGCAGCATGTTGA 900 0.5178 MMGLHQDPSDSGLQLILGLALTATPEDTITPSPPSISNNLHHHHLTTLRPNSYSSKSSFISTSNSEPEPSLTLGLSRETYRQQVVKLPRNIGHNKVSSEDPLEQTSPHSAISSFSSGRVKRERDLSCEEADATETERVSSRASDEEEDGTTARKKLRLTKEQSALLEESFKQHSTLNPKQKQALAKQLSLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLAQPLYMPMSAATLTMCPACERLGGGVGGGASAKSPFSMAPKPHFFNPFANPSAAC* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2387 299 MobiDBLite consensus disorder prediction 97 116 - -
Pvu3g2387 299 Pfam Homeodomain 153 207 IPR001356 GO:0003677
Pvu3g2387 299 MobiDBLite consensus disorder prediction 88 153 - -
Pvu3g2387 299 MobiDBLite consensus disorder prediction 117 153 - -
Pvu3g2387 299 Pfam Homeobox associated leucine zipper 209 243 IPR003106 GO:0006355|GO:0043565
Pvu3g2387 299 Gene3D - 157 207 - -
Pvu3g2387 299 Coils Coil 215 245 - -
Pvu3g2387 299 CDD homeodomain 153 210 IPR001356 GO:0003677
Pvu3g2387 299 SMART HOX_1 151 213 IPR001356 GO:0003677
Pvu3g2387 299 ProSiteProfiles 'Homeobox' domain profile. 149 209 IPR001356 GO:0003677
Pvu3g2387 299 ProSitePatterns 'Homeobox' domain signature. 184 207 IPR017970 GO:0000981|GO:0006355
Pvu3g2387 299 PANTHER - 50 299 - -
Pvu3g2387 299 SUPERFAMILY Homeodomain-like 143 210 IPR009057 -
Pvu3g2387 299 MobiDBLite consensus disorder prediction 48 75 - -
Pvu3g2387 299 SMART halz 209 252 IPR003106 GO:0006355|GO:0043565
Pvu3g2387 299 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22 50 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2387 Pvu-Chr3 45376192 45377790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2387 2 299 Homeobox Transcription Factor Family AT4G37790 57.556 1.08e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pvu3g2387 Homeodomain 2.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2387 K09338 - gmx:100807123 392.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0087 2 967574 969308 Pvu3g2387 3 45376192 45377790 PCT