Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2379 ATGACACAAATCTCATCGACCATCTACTTGCCTGAATTTGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCCTTTCCATTCCAGCTCGATGATTTTGACTTTGAGTCCTTCTCCGCGTCCCCTAAGGGTTCTTCCTCTCACAAGCGCTTGAGCTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAGTGCTGAAACTTCTGTTGCTCCACCTAGACCAACCAAGCAACCCAAGACTACTATGAGTACCTGGAGTGCTTACGGCACTGACATGATGGCTCCCAAGGCTGCTTCCTCTTCATCCTCCAAAATCATCTCCTTTGACAAATCCAATGCTTCTTCTGTTTCTTCCCAACAATCCCAACAATTCTACAAACTCGATGCTGCAAAACTACTGAAGAAGCCTAAAATTGAAATTGGGTATGGTGAGAGCCTGGATTTTGCAGCTGTGGCTTCTCAAAGTTCCTATGACAACGATTGTTTTCTAGGCTATGATAAGGAAGAGAAAAAGGCTGCAGTCACAATGGCTAGAAACCCAACCCAAGCTCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATTGCTCTTTCGGCTTTAGTCCCTGGACTCAAGAAGATGGACAAGGCTACCGTCCTAGAAGATGCTATAAAGTACGTGAAACAACTACAAGAACGGGTAAAGATCCTGGAGGAACAAACTGTGGATAAAACAGTTGAATCTGCAGTGTTCGTGAAGAGATCTGTTGTCTTCACCAGAGATGATAGCTCCTACTCCGATGAAAACTCCAACCAGTCACTCCCCGAAATCGAAGCAAGAATTTCTGGTAAAGAGGTACTCGTCAGGCTCCACTGTGACAAACACAGTGGACGAGCAGCTGCTATACTAAGGGAATTAGAGAAGCATAATCTCACAGTTCAGAGTAGCAGCTTTTTGCCCTTTGGGAATAACACTCTTGACATAACTATTGTTGCTAAGATGGACAAGGACTACTGCTTGACTGCAAAAGATCTCATAAGAAACTTAAGTCAGTGTTTGAGGCAGCTTTCATAG 1083 0.446 MTQISSTIYLPEFGMEDPTLFHQYPMDSFPFQLDDFDFESFSASPKGSSSHKRLSSESTQNSSLTQSAETSVAPPRPTKQPKTTMSTWSAYGTDMMAPKAASSSSSKIISFDKSNASSVSSQQSQQFYKLDAAKLLKKPKIEIGYGESLDFAAVASQSSYDNDCFLGYDKEEKKAAVTMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKMDKATVLEDAIKYVKQLQERVKILEEQTVDKTVESAVFVKRSVVFTRDDSSYSDENSNQSLPEIEARISGKEVLVRLHCDKHSGRAAAILRELEKHNLTVQSSSFLPFGNNTLDITIVAKMDKDYCLTAKDLIRNLSQCLRQLS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2379 360 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 188 244 IPR036638 GO:0046983
Pvu3g2379 360 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 184 233 IPR011598 GO:0046983
Pvu3g2379 360 CDD bHLH_AtNAI1_like 186 258 - -
Pvu3g2379 360 Gene3D - 175 248 IPR036638 GO:0046983
Pvu3g2379 360 Coils Coil 223 250 - -
Pvu3g2379 360 MobiDBLite consensus disorder prediction 42 86 - -
Pvu3g2379 360 SMART finulus 190 239 IPR011598 GO:0046983
Pvu3g2379 360 Pfam Helix-loop-helix DNA-binding domain 187 234 IPR011598 GO:0046983
Pvu3g2379 360 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 1 358 - -
Pvu3g2379 360 PANTHER BHLH TRANSCRIPTION FACTOR 1 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2379 Pvu-Chr3 45237056 45239851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2379 168 356 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 50.000 1.38e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g2379 HLH 7.4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2379 - - gmx:100798011 519.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2379 3 45237056 45239851 Pvu3g2379 3 45237056 45239851 ECH
Pvu2g0076 2 860605 862788 Pvu3g2379 3 45237056 45239851 PCT