Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2378 ATGACCTCAATGGAGGAATCATGGACTAGTTGGCTCTGCGATATGGAACCAGATGATTACAGTTTCATCAGTCAATCAGACATAAAGGTGGAGGATATGATTGGAAGTTTAGCATCTCCTTGTGATATAGCCACTGCTTTAGAAGAGAACCCGCAGAGTTCATTTTCCCAGGAGAGTCACTCTTCAGTCACTGAGAGTGGCATAGAAGAGAGGCCTTTGAAGTTACTCAAGAAGACATGCACTTCAAACTCTGCCAAAACAGACCAACTCTCACAAAAGAAAGCTTCCACACCCTCCTCCTATATTCTTTCCTTTGACAACACAAATCCACCAACAGCAAAGGTTGAATCGCTTGTAAAGCCAGAAACCAAGGTTAATCGTGGGATAGCTCTGCCTTCAAAGAATGAACCAAAACGTGTTACTCAGGAGAGCAAGAAGACGGGCTCATCAGCCAGATCTTCTCATCACACACAAGATCACATAATCGCCGAGAGAATGAGGAGAGAAAAAATTAGCCAGCAGTTCATAGCCCTCTCAGCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTATCTGTATTGGGGGAAGCTATAAGGTACGTGAAGGAGCTGAAGGAAAAAGTAAAAGTGATGGAGGAGCAGGGCAAAAGGAAAAGCCAGGAACCGGTGATGCGAGGGAAGAAATCTCAGGTTTGTGCTACTGCGGACGAGGATGTCTCAGACACTTCGTCAAATTCCTGTGAGTTGGGAAATTCTGATGACCCCTCATCCAAAACAAATCTGTCACTGCCAGAAGTAGAAGCAAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCTCTGCGAGAAAGAAAAGGTAGTGCTGGTGAACATTTTTAGAGAGATAGAGAAACTTCATCTCTCAGTCATCAATAGCAGCGCCTTATCTTTCGGTTCCTCAGTTCTCGACACAACCATCGTGGCCGAGATGGAGGATGAATTCAAGATGAGCGTGAAGGAACTGGCTGGAAATCTGAGAGTAGGACTGATGCAGTTTATGTAG 1041 0.4496 MTSMEESWTSWLCDMEPDDYSFISQSDIKVEDMIGSLASPCDIATALEENPQSSFSQESHSSVTESGIEERPLKLLKKTCTSNSAKTDQLSQKKASTPSSYILSFDNTNPPTAKVESLVKPETKVNRGIALPSKNEPKRVTQESKKTGSSARSSHHTQDHIIAERMRREKISQQFIALSALIPDLKKMDKVSVLGEAIRYVKELKEKVKVMEEQGKRKSQEPVMRGKKSQVCATADEDVSDTSSNSCELGNSDDPSSKTNLSLPEVEARVSKKNVLIRILCEKEKVVLVNIFREIEKLHLSVINSSALSFGSSVLDTTIVAEMEDEFKMSVKELAGNLRVGLMQFM* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2378 346 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 4 346 - -
Pvu3g2378 346 MobiDBLite consensus disorder prediction 50 72 - -
Pvu3g2378 346 Pfam Helix-loop-helix DNA-binding domain 159 204 IPR011598 GO:0046983
Pvu3g2378 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 221 IPR036638 GO:0046983
Pvu3g2378 346 Coils Coil 194 221 - -
Pvu3g2378 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 204 IPR011598 GO:0046983
Pvu3g2378 346 MobiDBLite consensus disorder prediction 138 159 - -
Pvu3g2378 346 MobiDBLite consensus disorder prediction 124 159 - -
Pvu3g2378 346 Gene3D - 145 221 IPR036638 GO:0046983
Pvu3g2378 346 SMART finulus 161 210 IPR011598 GO:0046983
Pvu3g2378 346 MobiDBLite consensus disorder prediction 212 260 - -
Pvu3g2378 346 MobiDBLite consensus disorder prediction 235 260 - -
Pvu3g2378 346 PANTHER BHLH TRANSCRIPTION FACTOR 4 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2378 Pvu-Chr3 45216543 45218543 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2378 9 346 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.888 7.90e-54 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g2378 HLH 3.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2378 - - gmx:100787596 469.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2378 3 45216543 45218543 Pvu3g2378 3 45216543 45218543 ECH
Pvu2g0075 2 849358 852602 Pvu3g2378 3 45216543 45218543 PCT