Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2377 ATGATGGAGGAATCAAATAAACCAATGGATGAAGCTTCAGCACCCAGCTGGTTATCTGATTTGGACATGGATGATTACAATTTGTTTCCAGATGAGTGTGCCATGAACTTGAACTTGTTTGATGACCAAGAGTTTCTACCACAAGACATTGTGAATGCCCTTGAAAAACAGACACAGACCCTGCAGCAATCTCTGTCTTCGGAGTGCCCTTCCAAAACTGTGAGCAACTCCTCCACCGATGATGCCAGTTTTGACTTTGAGAGACCAGCCAAGTTACTGAAAACGACAAGCAGTAGTTGCTGTAACTCTGACTCATCCACCATCACCAATAACCTCTCACCGAAACTTTCCCCATCCACATCCTTCTCCTCCTTTCAGTCTCAGATTCTCTCTTTTGACAACTCCAACTCCTCCCCTCCCAACAACACCACCCAGTTTTACGGCTTTGACTTAAACCCAACTCAGAACGAAATGGTGTCAGTGTCAGTGCCCCAACCGACAAAATCACGGTTACCTAATCAAACCCCAAAATGGTCCTCAAAAAATCAGAACTTTGAAACAAAACCCTCATCACATGCTAAGAGATCTCCAGCTCACGCTCAGGATCACATCATGGCCGAGAGAAAACGAAGAGAGAAGCTCAGCCAGAGCTTCATTGCTCTTGCAGCTCTTGTTCCTGGCCTAAAAAAGATGGATAAGGCTTCTGTGTTAGGGGACGCTATCAAATATGTCAAAGATCTTAAAGAGCGTTTGGCAGTGCTTGAAGAGCAGAGCAAGAAAACAAGGGGAGAATCGGTGGTGGTCCTGAACAAGCCAGACCTCTCAGGCGATGATGACTCTTCTTCATGTGATGAGAGCATTGATGCTGATAGTGTCAGTGACTCACTGTTTGAACTGGAATCAAGAGTGTCAGGGAAGGAGATGCTGCTTCGGATCCACTGCCGGAAGCAAAAGGGTCTTCTCGTCAAATTACTGGCGGAGATTCAAAGAAATAACCTCTTCGTTATTAATAGCAGTATCTTACCATTCGGTGATTCTATCATTGACATTACCGTAGTTGCTCAGATGGGAGAAAATTACAATTTGACCACGAAGGGACTTGTGAAGAACCTACGCGTGGCGGCACATAAGATTATGTCGTAA 1143 0.4506 MMEESNKPMDEASAPSWLSDLDMDDYNLFPDECAMNLNLFDDQEFLPQDIVNALEKQTQTLQQSLSSECPSKTVSNSSTDDASFDFERPAKLLKTTSSSCCNSDSSTITNNLSPKLSPSTSFSSFQSQILSFDNSNSSPPNNTTQFYGFDLNPTQNEMVSVSVPQPTKSRLPNQTPKWSSKNQNFETKPSSHAKRSPAHAQDHIMAERKRREKLSQSFIALAALVPGLKKMDKASVLGDAIKYVKDLKERLAVLEEQSKKTRGESVVVLNKPDLSGDDDSSSCDESIDADSVSDSLFELESRVSGKEMLLRIHCRKQKGLLVKLLAEIQRNNLFVINSSILPFGDSIIDITVVAQMGENYNLTTKGLVKNLRVAAHKIMS* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2377 380 Pfam Helix-loop-helix DNA-binding domain 202 247 IPR011598 GO:0046983
Pvu3g2377 380 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 12 380 - -
Pvu3g2377 380 Coils Coil 237 264 - -
Pvu3g2377 380 SMART finulus 204 253 IPR011598 GO:0046983
Pvu3g2377 380 MobiDBLite consensus disorder prediction 165 209 - -
Pvu3g2377 380 PANTHER BHLH TRANSCRIPTION FACTOR 12 380 - -
Pvu3g2377 380 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 203 264 IPR036638 GO:0046983
Pvu3g2377 380 MobiDBLite consensus disorder prediction 64 83 - -
Pvu3g2377 380 MobiDBLite consensus disorder prediction 192 209 - -
Pvu3g2377 380 CDD bHLH_AtNAI1_like 199 271 - -
Pvu3g2377 380 MobiDBLite consensus disorder prediction 165 191 - -
Pvu3g2377 380 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Pvu3g2377 380 Gene3D - 190 264 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2377 Pvu-Chr3 45197853 45200234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2377 75 374 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.836 3.82e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g2377 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2377 - - var:108333272 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2377 3 45197853 45200234 Pvu3g2377 3 45197853 45200234 ECH