Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2374 ATGGGCGTTTCTTTGTTTCAGTACCATGGCTGCAGGGATTGCCCTTGTCTCCGTGACCAGATCCAAAATTTGTACCATCCAAACCCTAACTCCACCACCACCACCACCTCTTCTCCTCCCTTACCCTCATCACCGTCTTGGATGTGGAATCCAAGGGACCAAGAAGATGACTCCTGGGAGGTCAGAGCGTTTGCAGAGGACACCAGCAACATCATGGGCACCACTTGGCCTCCGAGGTCCTATACCTGCACCTTCTGTAGAAGGGAGTTCCGTTCAGCACAAGCCCTCGGTGGCCACATGAACGTTCACCGCCGTGACCGAGCTCGCCTCCACCAAGCCTCACCCATCAACCACCACCAGCATCACCACCCCATCTCCTCTCTCTCCCGCTCACACCACTCACCCTCTTTTCTCAACCTCTGTCACTCTCCGGACCCTCTTTCAAATGGTGGGGTATGCCTCTTGTACCCCTTCCCTAGCCCTAACACAGCTCCATTCTCCCCTCTTGGCCACACCACTAGTTTCAATAATGCATGTGCTGACTCTCCCTCTTCTCTTTTCTCTCCCTCCTCTTCCCTTTCACACCCTCCAATGAGGGTCCCAACTTGCTCAAATGCCTCCTTTGATTTCGCAGTGGCGCAGCCTGCCACAGGCAGGAGGAACGCTTTCTCTTCTTATTCTGGGAAAATGGAGCACGAACCCGCAACCTCCTCCGCTCATCATGCCCAACACGAGGAGCTTGATCTAGAGCTCCGTCTGGGAAATAGATCAACATCAACGTCATGA 786 0.5407 MGVSLFQYHGCRDCPCLRDQIQNLYHPNPNSTTTTTSSPPLPSSPSWMWNPRDQEDDSWEVRAFAEDTSNIMGTTWPPRSYTCTFCRREFRSAQALGGHMNVHRRDRARLHQASPINHHQHHHPISSLSRSHHSPSFLNLCHSPDPLSNGGVCLLYPFPSPNTAPFSPLGHTTSFNNACADSPSSLFSPSSSLSHPPMRVPTCSNASFDFAVAQPATGRRNAFSSYSGKMEHEPATSSAHHAQHEELDLELRLGNRSTSTS* 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2374 261 MobiDBLite consensus disorder prediction 222 261 - -
Pvu3g2374 261 Pfam C2H2-type zinc finger 81 105 - -
Pvu3g2374 261 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Pvu3g2374 261 MobiDBLite consensus disorder prediction 27 51 - -
Pvu3g2374 261 MobiDBLite consensus disorder prediction 234 252 - -
Pvu3g2374 261 MobiDBLite consensus disorder prediction 27 52 - -
Pvu3g2374 261 PANTHER OS07G0101800 PROTEIN 47 256 - -
Pvu3g2374 261 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Pvu3g2374 261 PANTHER OS07G0101800 PROTEIN 47 256 - -
Pvu3g2374 261 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Pvu3g2374 261 SMART c2h2final6 81 103 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2374 Pvu-Chr3 45149792 45152206 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2374 46 254 C2H2 Transcription Factor Family AT4G17810 40.092 6.73e-36 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2374 - - pvu:PHAVU_003G230700g 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2374 3 45149792 45152206 Pvu3g2374 3 45149792 45152206 ECH
Pvu2g0072 2 805396 806931 Pvu3g2374 3 45149792 45152206 PCT