Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2372 ATGGACGCTCGCGAACCGCCCCGCGCCCCGCCACCCTCCATCATGGCAGGCCCCACCTCCTATGCCCACACCAACATCGGCCCTAATTCGTCCGGCGCCGTCATGATGGCGCCCGCCACCGCGCGATTTCCCTTCGGCGTCGTGCCGCAGCAGCAGCAACAGCCTCCGCCAGCGTCGGAGCCTTTCCCCGTCTCCCCCGCTGCCGCCTACGACGGCTCCTCCTCGCCGATGAAGCCATGCTCGCTCGCCAAGAAGAAGCGCGGTCGTCCCCGGAAGTACTCGCCGGACGGTAACATTGCCCTCGGCCTCGCTCCTACCCATGCCTCACCTCCTCCACCTGCCTCTAACGCCGCTTCCGGCGGCGGTATCGGTGGAGATTCGGCTGGTACTGCCTCCGCCGATGCTCCGGCGAAGAAGCACCGAGGAAGGCCTCCCGGTTCTGGAAAGAAACAGCTGGATGCTCTCGGAGCTGGTGGGGTTGGATTCACTCCCCACGTGATCTTGGTGGAGTCTGGCGAGGACATCACGGCAAAAATTATGGCATTTTCTCAGCAAGGGCCTCGGACAGTTTGTATTCTATCTGCTATTGGTGCAATCTGTAATGTTACCCTTCGACAACCTGCACTGTCTGGTGGTACTGCTACATACGAGGGCCGATTTGAGATTATATCATTATCAGGTGCCATGCAACAATCTGAAAGTAATGGTGAACGTAGCAGAACATGCACTTTGAATGTAACCCTTGCAGGGTCCGATGGACGTGTTTTGGGTGGCGGAGTTGCTGGAACGCTAACTGCGGCATCAACTGTACAGGTCATAGTGGGTAGCTTTATTGTGGATGGAAAAAAGTCGAGCTCGAATGTCCTAAAATCTGGGCCTTCTTCTGCACCACTCCCCCAAATGCTAACCTTTGGTGCACCCATGACTCCAACTAGTCCTACTTCTCAAGGGCCTTCAACTGAGTCCTCTGAGGAACATGACCACACTCCTTTTTGTCGGGGGCCTGGGCCTGGGTCTGGACCTGGACTCTACAATAATTCTAGTCAGCCCGTGCATAATATGCCCATGTACCATCATCCACTATGGGCTGGCCAAAGTCATCAGTGA 1107 0.5682 MDAREPPRAPPPSIMAGPTSYAHTNIGPNSSGAVMMAPATARFPFGVVPQQQQQPPPASEPFPVSPAAAYDGSSSPMKPCSLAKKKRGRPRKYSPDGNIALGLAPTHASPPPPASNAASGGGIGGDSAGTASADAPAKKHRGRPPGSGKKQLDALGAGGVGFTPHVILVESGEDITAKIMAFSQQGPRTVCILSAIGAICNVTLRQPALSGGTATYEGRFEIISLSGAMQQSESNGERSRTCTLNVTLAGSDGRVLGGGVAGTLTAASTVQVIVGSFIVDGKKSSSNVLKSGPSSAPLPQMLTFGAPMTPTSPTSQGPSTESSEEHDHTPFCRGPGPGSGPGLYNNSSQPVHNMPMYHHPLWAGQSHQ* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2372 368 Pfam Plants and Prokaryotes Conserved (PCC) domain 164 277 IPR005175 -
Pvu3g2372 368 SMART AT_hook_2 138 150 IPR017956 GO:0003677
Pvu3g2372 368 SMART AT_hook_2 84 96 IPR017956 GO:0003677
Pvu3g2372 368 MobiDBLite consensus disorder prediction 283 298 - -
Pvu3g2372 368 MobiDBLite consensus disorder prediction 45 155 - -
Pvu3g2372 368 MobiDBLite consensus disorder prediction 1 33 - -
Pvu3g2372 368 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 47 328 IPR039605 GO:0003680
Pvu3g2372 368 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 47 328 - -
Pvu3g2372 368 CDD DUF296 163 277 IPR005175 -
Pvu3g2372 368 MobiDBLite consensus disorder prediction 305 320 - -
Pvu3g2372 368 Gene3D - 164 289 - -
Pvu3g2372 368 SUPERFAMILY AF0104/ALDC/Ptd012-like 162 278 - -
Pvu3g2372 368 MobiDBLite consensus disorder prediction 283 368 - -
Pvu3g2372 368 ProSiteProfiles PPC domain profile profile. 158 298 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2372 Pvu-Chr3 45082712 45087909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2372 10 368 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 46.117 3.62e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2372 - - var:108323770 587.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0068 2 739721 744559 Pvu3g2372 3 45082712 45087909 PCT