Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2368 ATGCCAGTTCCACTTGCTCCCTACCCTGCACCAACAGCTCCTTATACACCACCAGCTAATGGTGCACAGAGTCAACTTGTCTGTTCTGGGTGTAGAAACCTTCTCATGTATCCAGCTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTAACAGGAGTGCCACCTCCTGGCACAGAAATGGCCCAGTTAGTTTGCGGAGGTTGCCATACTCTACTCATGTACATCCGTGGAGCGACAAATGTGCAATGTTCTTGTTGTCACACGGTCAATCTAGCTTTAGAAGCAAACCAGGTGGCACATGTCAACTGTGGGAACTGCAGGATGCTACTCATGTACCAATATGGAGCAAGATCCGTGAAATGTGCAGTTTGCAATTTTGTAACATCAGTTGGGGCCACAGCAAGCACCACTGAGCAGAAGTTCAACACTGTAACCATACAATAG 450 0.4844 MPVPLAPYPAPTAPYTPPANGAQSQLVCSGCRNLLMYPAGATSVCCAVCNAVTGVPPPGTEMAQLVCGGCHTLLMYIRGATNVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGATASTTEQKFNTVTIQ* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2368 149 PANTHER PROTEIN LSD1 1 142 IPR040319 -
Pvu3g2368 149 Pfam LSD1 zinc finger 67 91 IPR005735 -
Pvu3g2368 149 Pfam LSD1 zinc finger 28 52 IPR005735 -
Pvu3g2368 149 Pfam LSD1 zinc finger 105 129 IPR005735 -
Pvu3g2368 149 PANTHER PROTEIN LOL1 1 142 - -
Pvu3g2368 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 102 132 IPR005735 -
Pvu3g2368 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 64 93 IPR005735 -
Pvu3g2368 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 25 54 IPR005735 -
Pvu3g2368 149 SUPERFAMILY Multiheme cytochromes 28 126 IPR036280 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2368 Pvu-Chr3 45052549 45054893 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pvu3g2368 zf-LSD1 4.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2368 - - qsu:112000975 275.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0066 2 720443 722914 Pvu3g2368 3 45052549 45054893 PCT