Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2365 ATGGGTTGCACCATGAGGGAAAAACATATCAGGGCTAATCGGAGACCGCGATCGGCGAAACCGGACCCGGATTCTTGCGACAAAGATGCCATATCCAAATCCATAGCCGAGTCTGGTCTCAAGCCCTTCAGATATCATATGGCTGTCAACGATTCTTCCCCGAGCCCAAATTCAAACCCTAATGTGGAGGAAACTGGGTGGGGTTACTGTACAGAGGAACAATTGGAAGAGATTCTGTTGAAAAACTTGGAGTTTATTTACAATGAAGCTGTCTCAAAGCTTGTTGCGTTGGGTTACGATGAGGATGTTGCTGTTAAGGCCATGCTGCGAAATGGGCATTGTTATGGTGGCATGGATGCGCTGACAAATATTTTGCACAATTCCTTGGCGTATTTGAATAGTAATAGTGATGGTGGTGGTGGTGGGAATATGGATGAGACTGAGCCCGTGTTCTCTAATTTGAGGCAGTTAGAGGAGTACTCTGTGGCGGCTTTGGTGTGTTTGGTGCAACAGGTGAGGCCACATTTGAGCAAAGGTGATGCCATGTGGTGTTTGCTCATGAATGATCTTCATGTTGGGAGGGCTAGTGCTATGGATATTCCTGTGCCAGGCACTGGGAGCCCTGCTCCGGTTACCGGTGAGGGTGGTGGCAATTCGATTGGTGTTATGGGACCGGCTTTTTGTAGGTTTCATGGAGGGTGGGGATTTGGAAATGGGGGAGGCTTGGATTTTCCAGTGAATGGGATATTCTCTTGCGGGACAGAGATGAATTTGCAGCTGCAAAGAGACATTGAGTTTCCGAAGAGGTTTAACCTTTCTCCTTCAATGAAGTCCTTATTAAAGAGAAATGTTGCAATGTTTGCTGCTGGTTTTAGGGCAAACTCCAAGCAGTTGCAGGCGCAGGCAAAGACCATTTCTGGGCGGAGTACTGCACAACATAGTTTGGATTCTTTTACAGCGACCGGGACAGGAGTCCCGGCTGAGCAGTCTGGAGGAGATTCACAGAATCTCGATAACCAAGACGCTGTGAATTCGGTGCTGAGTAAATTTCGTGATTTGAATCTTGATGAGAATTTGGAGCTTGTGGCGGAAGATCAGAAGGATGAGGTGATAGTCACTTTATTTCATCAGATTAAGGATCTTGAGAAGCAGGTCGGTGAGCGAAAAGACTGGGCTCATCAGAAGGCAATGCAGGCTGCTAGAAAGCTAAGCAGTGATCTAACTGAACTCAAAATGTTGCGGATGGAAAGAGAGGAGACTCAGAAATTGAAGAAAGGGAAACCGGCCCTTGAGGACACAACCATGAAGAGGCTCTCAGAGATGGAGAATGCTTTGAGAAAGGCCAGTGGTCAACTGGACCTTGCGAATGCAGCTGTGAGGAGACTAGAAACTGAAAATGCAGAAATGAAAGCAGAGATGGAGGCTTCCAAATTAAGTGCATCAGAGTCAGTGACAGCTTGCTTAGAAGTTGCAAAAAGGGAGAAAAAATGTTTAAAAAAACTTCTAGCTTGGGAAAAACAGAAAGCTAAGCTGCAGCAAGAGATTTCTGGTGAAAAACAGAAGATATCAGAGACACAAGAAATGTTGGTTCAGATTAGACAGTATCAAAAGGAAGCTGAGGTCAAGTGGAAGGAGGAGTTGAAGGCTAAAGAGGAAGCCTTAGTACTGGTTGAGGAGGAACGGCGCTCTAAGGAAGCAGCTGAATCTAATAATAAGAGGAGGATTGAGGCTTTGCGTCTGAAGATAGAGATAGATTTCCAGCGCCACAAGGATGATCTATTAAGACTGGAGCAGGAACTTTCGCGCCTTAAAGCATCTGCTCAGTCTGCTGAGTTGCATCACCAATCAAGCACTTCACCTACAAGCAACTCTGAGGGCACGAAGCCCCAAAGAGAGACCATTGCTAGGCTGCTTCAACAATTAGATAATCTGGACGATTTTTCAGATAAAGAAGTGAATAGCAACAGAGAATGCATTATATGTATGAAAGATGAAGTCTCCATTGTTTTCTTGCCGTGTGCACACCAAGTTATGTGTGCTAGTTGCAGTGATGAGTATGGAAGAAAAGGAGGTAAGGCTGCTTGCCCTTGCTGCAGGGTTCAAATCCAACAGAGAATCCGTGTATTTGGGGCAAGTTCCTAA 2142 0.4575 MGCTMREKHIRANRRPRSAKPDPDSCDKDAISKSIAESGLKPFRYHMAVNDSSPSPNSNPNVEETGWGYCTEEQLEEILLKNLEFIYNEAVSKLVALGYDEDVAVKAMLRNGHCYGGMDALTNILHNSLAYLNSNSDGGGGGNMDETEPVFSNLRQLEEYSVAALVCLVQQVRPHLSKGDAMWCLLMNDLHVGRASAMDIPVPGTGSPAPVTGEGGGNSIGVMGPAFCRFHGGWGFGNGGGLDFPVNGIFSCGTEMNLQLQRDIEFPKRFNLSPSMKSLLKRNVAMFAAGFRANSKQLQAQAKTISGRSTAQHSLDSFTATGTGVPAEQSGGDSQNLDNQDAVNSVLSKFRDLNLDENLELVAEDQKDEVIVTLFHQIKDLEKQVGERKDWAHQKAMQAARKLSSDLTELKMLRMEREETQKLKKGKPALEDTTMKRLSEMENALRKASGQLDLANAAVRRLETENAEMKAEMEASKLSASESVTACLEVAKREKKCLKKLLAWEKQKAKLQQEISGEKQKISETQEMLVQIRQYQKEAEVKWKEELKAKEEALVLVEEERRSKEAAESNNKRRIEALRLKIEIDFQRHKDDLLRLEQELSRLKASAQSAELHHQSSTSPTSNSEGTKPQRETIARLLQQLDNLDDFSDKEVNSNRECIICMKDEVSIVFLPCAHQVMCASCSDEYGRKGGKAACPCCRVQIQQRIRVFGASS* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2365 713 Coils Coil 494 528 - -
Pvu3g2365 713 MobiDBLite consensus disorder prediction 1 30 - -
Pvu3g2365 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 710 IPR013083 -
Pvu3g2365 713 Coils Coil 540 570 - -
Pvu3g2365 713 MobiDBLite consensus disorder prediction 16 30 - -
Pvu3g2365 713 Pfam Zinc finger, C3HC4 type (RING finger) 655 704 - -
Pvu3g2365 713 PANTHER OS05G0141500 PROTEIN 1 712 IPR046934 -
Pvu3g2365 713 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 712 - -
Pvu3g2365 713 MobiDBLite consensus disorder prediction 317 339 - -
Pvu3g2365 713 SMART ring_2 658 698 IPR001841 -
Pvu3g2365 713 MobiDBLite consensus disorder prediction 607 629 - -
Pvu3g2365 713 Pfam Family of unknown function (DUF6592) 82 198 IPR046527 -
Pvu3g2365 713 Coils Coil 438 479 - -
Pvu3g2365 713 ProSiteProfiles Zinc finger RING-type profile. 658 699 IPR001841 -
Pvu3g2365 713 Coils Coil 586 613 - -
Pvu3g2365 713 SUPERFAMILY RING/U-box 639 705 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2365 Pvu-Chr3 45014633 45020969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2365 644 709 C3H Transcription Factor Family AT1G73950 35.714 9.94e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2365 - - gmx:100777787 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0065 2 714354 717830 Pvu3g2365 3 45014633 45020969 PCT