Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2353 ATGGTTTTCACTGCCAATGATTTACAAGAATGGAAAGATTTTCCCAAAGGACTCAAGGTTCTTCTTCTTGAGGGAGACAGCATTTCTGCTGCCGAAATAAGGGCAAAGCTCGAAGCCATGGACTATAATGTTTCTACATTCTGTGATGAGAATGAAGCCTTGTCAGCAATCTCAAGTACACCTGAAAGCTTCCACATTGCCATAGTAGAGGTGAGTTCAAGCAGTAGCGAGGGAGGTTTCAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATTATGACTTCTAACAACCATTGCCTGAACACAATGATGAAGTGCATAGCGCTTGGTGCAGTTGAGTTCCTCAGCAAACCACTCTCCGAGGACAAGCTCAAAAATATCTGGCAGCATGTGGTTCACAAGGCATTCAGTTCTGGGACAAGTATCCTGTGTGAATCGCTTAAACCTGTCAAGGAATCTGTAGTGCCCATGTTGCAGCTCCAAAAAGACAATGAACAACATGAAAGTAGCGTATCCATTGATATAGAGAAAGTATCCAGGTTTACTGATAATGATCATGTACTCTCTCCTGGAAATGATAAATATCCAGCTCCTTCAACCCCACAATTGATGCATGGGACAAGATTGTTAGACGATGGTGATTGCCAAGAGCAGACTAATTGCTCAACAGAAAAAGAAAGTGGGGAACATGATGGAGAATCTAAATCTGTCGAAACTACATGTGGAAATTTGAATGCTGAAACTGAAAGTACTGCTCAAGAGAGGAAATCGGAAATTACTTTGGCTAGGAAGGAAGTGGATTTAGTTGACACTTCCAAGGGTGAGAGTGTTGCTTCTCTACATACACAAAAAAGAAAGGTTGTAAGCAACACTGACAAAAATACAAAATCTCCAAATAAAGTAGGTGTTCGTAGTGATTCATGTGAGATAAGACCAAGTCGGAAGAAGATGAAAGTAGACTGGACGCCTGAGCTGCACAAAAAATTTGTGAAGGCAGTTGAGCAACTAAGCATTGATCAAGCCATTCCTTCTAGAATATTAGAATTAATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTTCAGAAGTACAGAATGCACAAGAGACAAATCTTTCCCAAGGAAGAAGATCGGAAATGGTTGAATCAAAGAGAAAGGAGCTATTGTCTTCAAAGACCAATTATGGCCTTTCCTCCATATCATTCTAATCACACACTTCCTCTGGCTCCTGTATATCCTATGTGGGGACAATCTAGCAGTCAAACGGCTGGCATGCAGATTTGGAGCTCTCCTGGTTATCCCTTGTGGCAGCCTACTGCTGAAAATTGGCACTGGAAACCATTTCCAAGGATGCATGCAGATGCATGGGGCTGTCCAGTGTTACCAGTACCACCACCTCCTCAAGCTCCTTTTCCCTACTCTCAGAATATGCCTGCGTTGCTCAATGCTGATGCTGCAGATCACACGTTTACCATGCCACAAAGTTCCTTAGAGCATTATCCGGCACAGGAGGTGGTTGACAAGGTTGTGAAAGAGGCAGTAAGCAAGCCATGGTTACCCTTGCCTTTGGGCCTGAAACCTCCTTCCACAGATAGTGTGTTGGCTGAGTTATCAAGGCAAGGCATTTCAAGCATCCCTCCTAGGAGCAGCAAGGGTTCAAATTCAGGCTGA 1680 0.4351 MVFTANDLQEWKDFPKGLKVLLLEGDSISAAEIRAKLEAMDYNVSTFCDENEALSAISSTPESFHIAIVEVSSSSSEGGFKFLENAKDLPTIMTSNNHCLNTMMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFSSGTSILCESLKPVKESVVPMLQLQKDNEQHESSVSIDIEKVSRFTDNDHVLSPGNDKYPAPSTPQLMHGTRLLDDGDCQEQTNCSTEKESGEHDGESKSVETTCGNLNAETESTAQERKSEITLARKEVDLVDTSKGESVASLHTQKRKVVSNTDKNTKSPNKVGVRSDSCEIRPSRKKMKVDWTPELHKKFVKAVEQLSIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIFPKEEDRKWLNQRERSYCLQRPIMAFPPYHSNHTLPLAPVYPMWGQSSSQTAGMQIWSSPGYPLWQPTAENWHWKPFPRMHADAWGCPVLPVPPPPQAPFPYSQNMPALLNADAADHTFTMPQSSLEHYPAQEVVDKVVKEAVSKPWLPLPLGLKPPSTDSVLAELSRQGISSIPPRSSKGSNSG* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2353 559 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 557 IPR044825 GO:0003700|GO:0045893
Pvu3g2353 559 SMART REC_2 18 128 IPR001789 GO:0000160
Pvu3g2353 559 SUPERFAMILY Homeodomain-like 314 373 IPR009057 -
Pvu3g2353 559 Gene3D - 313 374 - -
Pvu3g2353 559 MobiDBLite consensus disorder prediction 184 258 - -
Pvu3g2353 559 Pfam Myb-like DNA-binding domain 319 368 IPR001005 -
Pvu3g2353 559 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 557 - -
Pvu3g2353 559 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Pvu3g2353 559 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 316 371 IPR006447 GO:0003677
Pvu3g2353 559 MobiDBLite consensus disorder prediction 536 559 - -
Pvu3g2353 559 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Pvu3g2353 559 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 313 372 IPR017930 -
Pvu3g2353 559 MobiDBLite consensus disorder prediction 528 559 - -
Pvu3g2353 559 MobiDBLite consensus disorder prediction 277 309 - -
Pvu3g2353 559 Gene3D - 18 139 - -
Pvu3g2353 559 SUPERFAMILY CheY-like 16 134 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2353 Pvu-Chr3 44865220 44871678 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2353 1 552 Response Regulator Gene Family AT4G18020 49.652 1.31e-142 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Pvu3g2353 Response_reg 3.4e-07 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2353 - - gmx:100777535 939.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0048 2 579047 585488 Pvu3g2353 3 44865220 44871678 PCT