Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2347 ATGGCTCTTTCTCTTTTGTGTCCTCTTCTTGCCACCTTTCTTTTCATGCAAACTCTGGCAGATACTTCCTTTGTTCAATCTCGTGCAGCATATTACCCAAACTCTGAAGAAAATGGCACAGACGTTGGTGCATGTGGATTTGGTTCCTTTGGTGCCACCGTTAATGGTGGGGATGTATCAGCTGCATCTAATCTTTATCGAAATGGTGTTGGCTGTGGTGCCTGTTACCAGGTGAGATGTAGCAATAGTGTTTATTGCTCAGGAAATGGTGTCACCATAGTAATAACTGACCAAGGCTCAAGTGCTAACACTGACTTCATTCTTAGCCAACGTGCTTTTGGTGGGATGGCTATCAACAAGGATGCAGCTGCTTCTCTATTAGCTCTTGGCATAGTTGATATTGAGTATAGACGGGTTTCATGCAGCTACCCAAACAAAAACATTACAGTTAAGATACATGAGAGTAGCAACAACCCTCACTATTTGGGTTTTGTCTTGTGGTTTCAACAAGGAAGTAGAGATATAACTGCTGTGCAACTTTGCGAGACTCAGAACTTTGTGTGCAAGTTACTGGATCGGAGTCACGGGGCAGTATGGACCACTACCGCGCCACCAAGTGGACCTTTGGCTTTGAGGATGTTGTTTAGTGCTGAAGAAGAGGGAGACGAATCATGGGTCGTTCCAGTTAATGACATTCCACAAGACTGGAAGGCAGGAGAAACGTACGACTTAGGGATACAAGTGGACCAATAG 753 0.4462 MALSLLCPLLATFLFMQTLADTSFVQSRAAYYPNSEENGTDVGACGFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCSNSVYCSGNGVTIVITDQGSSANTDFILSQRAFGGMAINKDAAASLLALGIVDIEYRRVSCSYPNKNITVKIHESSNNPHYLGFVLWFQQGSRDITAVQLCETQNFVCKLLDRSHGAVWTTTAPPSGPLALRMLFSAEEEGDESWVVPVNDIPQDWKAGETYDLGIQVDQ* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2347 250 SUPERFAMILY Barwin-like endoglucanases 12 145 IPR036908 -
Pvu3g2347 250 Gene3D - 11 142 IPR036908 -
Pvu3g2347 250 Pfam Lytic transglycolase 62 136 IPR009009 -
Pvu3g2347 250 PANTHER EXPANSIN-B3 4 249 - -
Pvu3g2347 250 Gene3D - 143 248 IPR036749 -
Pvu3g2347 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 42 146 IPR007112 -
Pvu3g2347 250 SUPERFAMILY PHL pollen allergen 146 243 IPR036749 -
Pvu3g2347 250 PRINTS Expansin/Lol pI family signature 41 59 IPR007118 GO:0005576
Pvu3g2347 250 PRINTS Expansin/Lol pI family signature 129 145 IPR007118 GO:0005576
Pvu3g2347 250 PRINTS Expansin/Lol pI family signature 230 244 IPR007118 GO:0005576
Pvu3g2347 250 Pfam Expansin C-terminal domain 148 218 IPR007117 -
Pvu3g2347 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 244 IPR007117 -
Pvu3g2347 250 PANTHER POLLEN ALLERGEN ORY S 1, PUTATIVE-RELATED 4 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2347 Pvu-Chr3 44808997 44811091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2347 2 246 Expansin Gene Family AT4G17030 41.463 9.14e-57 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2347 - - gmx:100812555 473.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0041 2 546702 548215 Pvu3g2347 3 44808997 44811091 PCT