Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pvu3g2313 | ATGAGCCGACGCGCCTTCAAAGAACTGGGACGTGATCAAAATGCTTACGAAGAGCTTAAGAAATACGCTACAGTGGAGATTAAATACAAAAGGGTTTCAAGTACTTACACCGGCACCGTCTTGTTCTATATCAAGGAAACTAGCAGCAACCCTGGTTACTTTGCCGTGGTCATTCTGAATGTAAATGGAATAAACGACGTGACTGCTGTTGAAATGTGGAAGTCTGGAGAATGGAAGGCACTTAACAGGAAGTATGGAGCAGTGTTTGAGTTTCTTAACCCTCCGAGTGGCGGAATCCGGTTGAGGTTAAAGGTGAGTGGCATGTCTGATTGGGTGAACCCCAAGGTTCCCATTCCTAGTAACTGGCAGCCTGGAAGCACTTATATCACTGAGGTGGGGCTTAAATAG | 408 | 0.4583 | MSRRAFKELGRDQNAYEELKKYATVEIKYKRVSSTYTGTVLFYIKETSSNPGYFAVVILNVNGINDVTAVEMWKSGEWKALNRKYGAVFEFLNPPSGGIRLRLKVSGMSDWVNPKVPIPSNWQPGSTYITEVGLK* | 136 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pvu3g2313 | 135 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 52 | 130 | IPR007117 | - | |
| Pvu3g2313 | 135 | PANTHER | EXPANSIN-B3 | 1 | 134 | - | - | |
| Pvu3g2313 | 135 | SUPERFAMILY | PHL pollen allergen | 44 | 129 | IPR036749 | - | |
| Pvu3g2313 | 135 | Gene3D | - | 38 | 133 | IPR036749 | - | |
| Pvu3g2313 | 135 | PANTHER | EXPANSIN-B1-LIKE PROTEIN | 1 | 134 | - | - | |
| Pvu3g2313 | 135 | Pfam | Expansin C-terminal domain | 42 | 113 | IPR007117 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pvu3g2313 | Pvu-Chr3 | 44397539 | 44398234 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pvu3g2313 | 1 | 134 | Expansin Gene Family | AT4G17030 | 35.252 | 2.96e-25 | 94.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pvu3g2313 | - | - | pvu:PHAVU_003G224700g | 278.1 |