Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2304 ATGCAAGGGAAGATGAGGCCTATTTTCTGTGGAAACTTCGAATATGATGCCCGGCAGTCAGAGTTGGAGCGTCTTTTTAGACGATATGGGAAGGTTGACAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTATATGGAAGATGAAAGAGATGCTGAAGCTGCTATTCGTGCTCTTGATCGAGTAGAATTTGGTCGGAAGGGACGCAGACTCCGTGTGGAATGGACAAAGCATGAACGTGGTGTGAGAAGGCCTTCTAGTTCAAGAAGATCTTCAGCTAATGGGAGGCCATCAAAGACCTTGTTCGTAATAAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAACCTTATGGCAAGATAGTCAGTGTTAGGATCAGAAGGAATTTTGCTTTTGTTCAGTATGAGTCAGAGGATGATGCTAGCAGAGCACTGGAAGCTACAAATATGAGCAAGTTACTGGATCGAGTTATTTCAGTTGAATTTGCTGTTAAAGATGATGATGATAGGAGAAATGGATATAGCCCTGAGAGAGGCCGTGATCGTCAACGTGATAGAAGCCGTGATGGAAGACGATCCCCTAGTCCTTATAGGAGAGAAAGAGGTAGTCCTGATTATGGCCGTGGGCCAAGTCCATATCAGAGAGAGAGGGGCAGCCCTGACTATGGCCGTGACCGAAGCCGGAGCAGAAGCCCTCCTAGGAGAGAGCGAGCTAGCCCTGCATATGGGCGCAGAAGCCCTAGTCCATATAGAAGAGAAAGGGAGGGTTCTGATCCTGTTCGGGACTCCAGCCGCAGTCCTTATCACAAAGAACGTGGGAGAACTGACCATGGCATTTCTCCTTCTCACAGTCTCGAAGAAAGAGGGAGGAAAAGCCCTCAAAATGGTCGTGGTTCTAGCCATAGTCCTCGTGATACTGGGAAGACTAGCCCTGAAAATGGACATGGCTCTGGGAGTCCTGAAGAAAAAGGGAATCCCAGCCCTTACAATGGTTATGGAAGGAGCCCAAATACTGTGCCTGATCCTAGGGACAGTCCCAATTACGGTGGCCCTGAAAGTCCCATGCATGAAAGATATCGCAGCCAGTCTCCCCCTGCAGACGAATGA 1122 0.4795 MQGKMRPIFCGNFEYDARQSELERLFRRYGKVDRVDMKSGFAFIYMEDERDAEAAIRALDRVEFGRKGRRLRVEWTKHERGVRRPSSSRRSSANGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVSVRIRRNFAFVQYESEDDASRALEATNMSKLLDRVISVEFAVKDDDDRRNGYSPERGRDRQRDRSRDGRRSPSPYRRERGSPDYGRGPSPYQRERGSPDYGRDRSRSRSPPRRERASPAYGRRSPSPYRREREGSDPVRDSSRSPYHKERGRTDHGISPSHSLEERGRKSPQNGRGSSHSPRDTGKTSPENGHGSGSPEEKGNPSPYNGYGRSPNTVPDPRDSPNYGGPESPMHERYRSQSPPADE* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2304 373 MobiDBLite consensus disorder prediction 172 210 - -
Pvu3g2304 373 MobiDBLite consensus disorder prediction 223 299 - -
Pvu3g2304 373 PANTHER - 8 215 - -
Pvu3g2304 373 MobiDBLite consensus disorder prediction 172 373 - -
Pvu3g2304 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 99 170 IPR000504 GO:0003723
Pvu3g2304 373 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 8 215 - -
Pvu3g2304 373 SUPERFAMILY RNA-binding domain, RBD 6 174 IPR035979 GO:0003676
Pvu3g2304 373 CDD RRM1_AtRSp31_like 6 77 - -
Pvu3g2304 373 SMART rrm1_1 100 166 IPR000504 GO:0003723
Pvu3g2304 373 SMART rrm1_1 7 74 IPR000504 GO:0003723
Pvu3g2304 373 Gene3D - 90 180 IPR012677 -
Pvu3g2304 373 Gene3D - 2 89 IPR012677 -
Pvu3g2304 373 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 78 IPR000504 GO:0003723
Pvu3g2304 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 66 IPR000504 GO:0003723
Pvu3g2304 373 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 101 163 IPR000504 GO:0003723
Pvu3g2304 373 MobiDBLite consensus disorder prediction 300 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2304 Pvu-Chr3 44234854 44238907 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2304 8 165 Eukaryotic Initiation Factors Gene Family AT4G34110 24.855 7.81e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2304 K12893 - gmx:100796509 637.491