Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2302 ATGGATGACAACCCTTTTCCAAACGTCCCACTGCCACCCCCACCAATACAAGTCCCTGATAACTTCTTTCTCTCTTCCTCCTCTTCGCCAACCCCAACCACGTCCTCTCCGTCTCCCACTCCTTCCACCGCCTTCCGCTACAGGGGGACGCGCTGCCGTAGCGGTAAGTGGGTGTCCGAGATAAGGGAGCCACGTAAAACCAAGCGCATTTGGCTCGGGACTTACCCGGCAGCGGAAATGGCTGCGGCCGCTTATGATGTTGCGGCTCTCGCGTTGAAGGGACCCGACACGCCCCTTAACTTCCCCAATTCCATACTCTCGTACCCGATTCCCGCGTCATTGTCGGCCACCGATATTCGCGCTGCGGCTGCGGCTGCTGCGCAGGCCAGGATCGTGAGGGCGCCCCAGGAGAGTGGGCAAGCGGTAAACCCTCATATTGGACAGGAGTTGGAAAGGCGTGAGGAGTACTATGATGAGGATGAGTTGTTGAACATGCCGAATTTGCTTGATGAAATGGCCAGGGGAATGCAGGTTAGTCCCCCTAGGATCAGTTCCTTTTCTTCTGATGATTCGCCTGGCAATTCTGATGGAGATAACCTTTGGAGTTATACCCTCTGA 618 0.5583 MDDNPFPNVPLPPPPIQVPDNFFLSSSSSPTPTTSSPSPTPSTAFRYRGTRCRSGKWVSEIREPRKTKRIWLGTYPAAEMAAAAYDVAALALKGPDTPLNFPNSILSYPIPASLSATDIRAAAAAAAQARIVRAPQESGQAVNPHIGQELERREEYYDEDELLNMPNLLDEMARGMQVSPPRISSFSSDDSPGNSDGDNLWSYTL* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2302 205 MobiDBLite consensus disorder prediction 20 46 - -
Pvu3g2302 205 Pfam AP2 domain 52 94 IPR001471 GO:0003700|GO:0006355
Pvu3g2302 205 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Pvu3g2302 205 Gene3D AP2/ERF domain 46 104 IPR036955 GO:0003700|GO:0006355
Pvu3g2302 205 SMART rav1_2 46 108 IPR001471 GO:0003700|GO:0006355
Pvu3g2302 205 MobiDBLite consensus disorder prediction 179 205 - -
Pvu3g2302 205 MobiDBLite consensus disorder prediction 1 19 - -
Pvu3g2302 205 MobiDBLite consensus disorder prediction 1 46 - -
Pvu3g2302 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 33 203 - -
Pvu3g2302 205 ProSiteProfiles AP2/ERF domain profile. 46 102 IPR001471 GO:0003700|GO:0006355
Pvu3g2302 205 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Pvu3g2302 205 MobiDBLite consensus disorder prediction 180 205 - -
Pvu3g2302 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 33 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2302 Pvu-Chr3 44193652 44195231 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2302 47 203 AP2-EREBP Transcription Factor Family AT5G52020 58.235 1.05e-48 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu3g2302 AP2 4.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2302 - - var:108325547 288.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0528 2 4734390 4737763 Pvu3g2302 3 44193652 44195231 PCT