Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2300 ATGCATATAGAGGAATTGAAGGGGGGTGACATAGGAGAAGGTGAGGAGGTAGGAGGGTTGACGTCAGTGGGTTATGATGCAAAGAGGGTATTGGTTGGAGCAGGTGCTCGTGTGCTATTCTACCCAACCCTTTTTTACAATGTTGTCAGGAATAAGGTTCAGGCTGAGTTTCGATGGTGGGATAAGGTTGATGAGTTCATATTGTTAGGCGCTGTTCCATTTCCTATAGATGTTCCACACTTGAAGGAGCTTGGTGTTCGTGGGGTCATCACATTGAATGAGTCATATGAAACTTTGGTTCCGACAACATTATATTATACTCACGGAATTAACCACTTAGTGATCCCTACTAGAGATTACTGTTTTGCTCCTTCATTGCATGACATACGACGTGCTGTGAATTTCATACATGAAAACGCATTATCTGGACACACTACATATGTGCATTGCAAAGCTGGACGTGGTCGCAGCACAACTATTGTTATTTGTTATCTGGTGCACCACAAAATGATGACACCTGGTGATGCATATGATTATCTGAAATCAATTCGACCAAGAGTGCTTCTAGCTTCCTCTCAGTGGCAAGTTGTCCAAGAGTACTACCACCATATTATGGTGAGGAGGGCTGTTGGATGTGCTCCTACAACGAATCTATTAGTAAAGGCTTCTGAAGGGGCAATAGGTTCACGAGATCTTGTGATATTTGATGACAATTCTGTAGTCATGGTAACTGGGTCAGATTTAGAAGGTTACGACCCAAGTAATCAATCAAGAACTGTGGCAAGTGAAATATGGGCAGATTTAAGTGTTGTGTATCGTGTACGAGTTGCTGGACAAGCGGCATTGGAGAGAATATCATGCCTTTGGCTACGATATGGTACTACTACTAACCACAATATTTTTACTGAGAAACCAAGCAATCATCACTTGGGAGAAATTAATGTTGATATCCACATGTACTGA 963 0.4206 MHIEELKGGDIGEGEEVGGLTSVGYDAKRVLVGAGARVLFYPTLFYNVVRNKVQAEFRWWDKVDEFILLGAVPFPIDVPHLKELGVRGVITLNESYETLVPTTLYYTHGINHLVIPTRDYCFAPSLHDIRRAVNFIHENALSGHTTYVHCKAGRGRSTTIVICYLVHHKMMTPGDAYDYLKSIRPRVLLASSQWQVVQEYYHHIMVRRAVGCAPTTNLLVKASEGAIGSRDLVIFDDNSVVMVTGSDLEGYDPSNQSRTVASEIWADLSVVYRVRVAGQAALERISCLWLRYGTTTNHNIFTEKPSNHHLGEINVDIHMY* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2300 320 Pfam Dual specificity phosphatase, catalytic domain 81 201 IPR000340 GO:0008138|GO:0016311
Pvu3g2300 320 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 52 203 IPR029021 -
Pvu3g2300 320 PANTHER - 1 320 - -
Pvu3g2300 320 SMART dsp_5 62 203 IPR020422 GO:0006470|GO:0008138
Pvu3g2300 320 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Pvu3g2300 320 ProSiteProfiles Dual specificity protein phosphatase domain profile. 59 206 IPR020422 GO:0006470|GO:0008138
Pvu3g2300 320 Gene3D Protein tyrosine phosphatase superfamily 59 209 IPR029021 -
Pvu3g2300 320 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 195 IPR000387 GO:0016311|GO:0016791
Pvu3g2300 320 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 320 - -
Pvu3g2300 320 CDD PTPMT1 59 201 IPR044596 GO:0004721
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2300 Pvu-Chr3 44173054 44176802 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2300 28 320 Protein tyrosine phosphatase (PTP) family AT2G35680 60.797 9.83e-124 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2300 - - gmx:100790413 536.569