Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2290 ATGGCACCAAGGATCAGTGATGGAACACCCAAGAGATCACCAATGAACAGAGGTGCATGGACCCCAGAGGAAGACCGAAAGCTTGCCCATTGCATTGAAATATATGGTGCAAAGAGGTGGAAGACTGTAGCACTTAAATCAGGTTTGAATAGATGTGGGAAGAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCTAATATCAAGAGGGGAAACATATCAGATGAAGAAGAAGATTTGATTCTTAGGCTTCACAGACTCTTGGGAAACAGGTGGTCTTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAATGAAATTAAAAATTATTGGAACTCTCATTTGTGCAAAAAAGTGAATCAGAAAGAGGAGAGACCAGAATCTTCAACAACACAGGAAATTATTGGCCAGAATGAGAATGCTGAGGACAACCATGCAATGTCAGAGAATGGGATTGCAACTAACGAAAGTGGTAACTTAGATGTTACATTCGACGTTGACGAATTTTTCAACTTCTCTGAGGAATCCTGTGGGTTAGATTGGCTGAACAAGTACTTGGGAACTTGA 567 0.418 MAPRISDGTPKRSPMNRGAWTPEEDRKLAHCIEIYGAKRWKTVALKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQKEERPESSTTQEIIGQNENAEDNHAMSENGIATNESGNLDVTFDVDEFFNFSEESCGLDWLNKYLGT* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2290 188 MobiDBLite consensus disorder prediction 1 20 - -
Pvu3g2290 188 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Pvu3g2290 188 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 8 186 - -
Pvu3g2290 188 MobiDBLite consensus disorder prediction 121 143 - -
Pvu3g2290 188 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Pvu3g2290 188 SMART sant 16 66 IPR001005 -
Pvu3g2290 188 SMART sant 69 117 IPR001005 -
Pvu3g2290 188 CDD SANT 19 64 IPR001005 -
Pvu3g2290 188 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Pvu3g2290 188 Pfam Myb-like DNA-binding domain 70 115 IPR001005 -
Pvu3g2290 188 SUPERFAMILY Homeodomain-like 15 111 IPR009057 -
Pvu3g2290 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Pvu3g2290 188 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 8 186 - -
Pvu3g2290 188 Gene3D - 17 69 - -
Pvu3g2290 188 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Pvu3g2290 188 CDD SANT 74 115 IPR001005 -
Pvu3g2290 188 Gene3D - 73 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2290 Pvu-Chr3 43987717 43989264 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2290 15 128 MYB Transcription Factor Family AT3G13540 64.912 7.73e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g2290 Myb_DNA-binding 6.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2290 K09422 - gmx:100799575 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0588 2 5819575 5820090 Pvu3g2290 3 43987717 43989264 PCT