Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2276 ATGGATAATAGACACAAATGCAAGCTTTGTTCAAGGTCTTTCACCAATGGCAGAGCCCTTGGGGGTCACATGAAGGCTCATCTAGCAACTCTCCCTCTTCCTCCAAAGCCTCAAACTTTAACCCACTCTTCCTTCACTTATTCCTCTTCCTCAGACTCTGAGCAAGAACAACTCAAAGAACAAGATTCTCTTAGTTACGCGCTCAGGGAGAATCCTAAGAAGAGCTTCAGAGTAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAGCGATCCAAGCGGAACCGGAAATCGGCCATGCTGAAGCTCAGCTTCGTGGTGTCCACACCTCTCATCACCGCCGAACCCGAACCTGTAAGTTCAGTCTCCGACACCTCCCCGGAGGAAGACGTAGCCATGAGCCTCATGATGCTCTCCCGCGACACGTGGAACGTAGTCCCCAATGCAGGTCCACCGCAGAGATCAAAGAGGCACTGCACGGGATCAGAGACCAAGCTCAAGAAACTCCGCGGCAAGTACCTCTGTCACACTTGCGGCAAAGCCTTTCGATCCTCTCGGGCCTTGGGGAGTCACAGAACCATATGTTGCCGTCAAGAGCAAGTTCAAAATCAAAACAACAACAACAATAGTATTAAGGTTTTTGAATGTCCCTTTTGTTACAAGGTGTTCGGCTCTGGTCAAGCTCTGGGCGGACACAAGAGATCTCATCTAATCCCTTCATCATCCTCAACAGTTAACGATTCCCTTAAATTCAAACAGACCTTCATAGATCTCAACATGCCGGCGCCGCCAGAAGAGGACGACCTTAGTGTTGTCTCTGATGCCTAA 846 0.4988 MDNRHKCKLCSRSFTNGRALGGHMKAHLATLPLPPKPQTLTHSSFTYSSSSDSEQEQLKEQDSLSYALRENPKKSFRVTDPEDRESETESKNPTRQRSKRNRKSAMLKLSFVVSTPLITAEPEPVSSVSDTSPEEDVAMSLMMLSRDTWNVVPNAGPPQRSKRHCTGSETKLKKLRGKYLCHTCGKAFRSSRALGSHRTICCRQEQVQNQNNNNNSIKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSLKFKQTFIDLNMPAPPEEDDLSVVSDA* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2276 281 SUPERFAMILY beta-beta-alpha zinc fingers 4 199 IPR036236 -
Pvu3g2276 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 220 242 IPR013087 -
Pvu3g2276 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
Pvu3g2276 281 MobiDBLite consensus disorder prediction 36 64 - -
Pvu3g2276 281 ProSitePatterns Zinc finger C2H2 type domain signature. 7 27 IPR013087 -
Pvu3g2276 281 MobiDBLite consensus disorder prediction 73 95 - -
Pvu3g2276 281 MobiDBLite consensus disorder prediction 32 105 - -
Pvu3g2276 281 ProSitePatterns Zinc finger C2H2 type domain signature. 222 242 IPR013087 -
Pvu3g2276 281 SUPERFAMILY beta-beta-alpha zinc fingers 218 243 IPR036236 -
Pvu3g2276 281 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 3 281 IPR044303 GO:0006355
Pvu3g2276 281 SMART c2h2final6 5 27 IPR013087 -
Pvu3g2276 281 SMART c2h2final6 220 242 IPR013087 -
Pvu3g2276 281 SMART c2h2final6 179 199 IPR013087 -
Pvu3g2276 281 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 3 281 - -
Pvu3g2276 281 Pfam C2H2-type zinc finger 179 198 - -
Pvu3g2276 281 Pfam C2H2-type zinc finger 219 243 - -
Pvu3g2276 281 Pfam C2H2-type zinc finger 4 29 - -
Pvu3g2276 281 Gene3D Classic Zinc Finger 176 242 - -
Pvu3g2276 281 ProSiteProfiles Zinc finger C2H2 type domain profile. 5 32 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2276 Pvu-Chr3 43812834 43813679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2276 4 280 C2H2 Transcription Factor Family AT2G45120 39.172 2.40e-46 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g2276 zf-C2H2_6 3.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2276 - - gmx:100806512 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu2g0610 2 6165939 6167517 Pvu3g2276 3 43812834 43813679 PCT