Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2267 ATGACTTCTACGATGTTGTTGTTGGTTTTGTTGATGATATTATGTATTTCACATCCCTCCTTCCAAATGCTACTCTTGCCACTTACACACACTCTTTCCCAAGCCCAATTCAACAGCACCCACCACCTTTTGAAATCCACCTCCACCCGTTCCGCCGCCCGCTTCCGCCGCCAACTTTCCCTTCCCCTCTCACCAGGCAGCGACTATACTCTCTCCTTCAACCTGGGCCCCCATGCCCAGCCCATAACCCTCTACATGGACACAGGCAGTGACTTAGTCTGGTTCCCCTGCGCCCCTTTCAAATGTATTCTCTGCGAGGGAAAGCCCAACGAGCCCAACGCCTCTCCCCCAACCAACATCACCCGAAGTGTCGCCGTTTCGTGCAAGTCTCTCGCATGCTCCGCAGCGCACAACTTAGCCTCCTCTTCCGATCTCTGCGCAATGGCTCGTTGCCCTCTCGAATCAATCGAAACCTCCGACTGCGCCAATTTCAAGTGTCCACCGTTTTACTACGCCTACGGCGACGGAAGCTTAGTCGCGCGTCTATATCGTGACACGCTCTCTCTCTCTTCTCTGTCTCTTAGAAACTTCACCTTCGGTTGCGCTCACACAGCCCTCGCCGAGCCTACTGGAGTCGCCGGATTCGGCCGCGGTTTGCTCTCTCTCCCGGCGCAGCTAGCTACTCTCTCTCCTCAGCTCGGAAACCGCTTTTCTTATTGCCTTGTTTCTCACTCGTTTGACTCTGACCGAGTTCGAAAACCAAGTCCACTCATTCTCGGCCGTTACGAGGAGAAGGAAAAGGAGAAGATCAGTGGAGGTGGAATGGTTGAGTTCGTGTACACGTCTATGCTTGAAAATCCTAAGCATCCTTATTTTTATACCGTTGGCTTAATCGGTATCTCCGTTGGGAAAAGGACTATTCCGGCGCCGGAGATGCTGCGGCGGGTGAACAATCGAGGAGACGGTGGAGTTGTTGTGGATTCCGGCACGACGTTCACGATGTTGCCGGAGGAATTTTATAACTCGGTGGTTGACGAGTTCGACCGCCGAGTCGGGCGAGTCAACAAGCGCGCGCGTAAGGTTGAAGAAAAAACTGGACTCGCGCCGTGCTATTATTTGAATGCGGTGGCGGAAGTGCCGGTTGTGACGCTGCGTTTTGCTGGAGGGAATTCCAGTGTGGTGCTGCCTAGGAAGAATTATTTCTACGAGTTTTTGGACGGTAGCGGTGAGAGGAAGGGGAAGAGGAGGGTGGGGTGTTTGATGCTGATGAACGGTGGAGATGAGGGTGAATTGAGTGGGCCCGGGGCCACACTCGGGAATTACCAGCAGCAAGGATTTGAGGTTGTGTATGAGCTGGAAGAGAAGCGCGTGGGATTCGCCAAGAGGCATTGCGCGTCGCTTTGGGAGAGACTGAATCGTGACAAGAACTAG 1431 0.536 MTSTMLLLVLLMILCISHPSFQMLLLPLTHTLSQAQFNSTHHLLKSTSTRSAARFRRQLSLPLSPGSDYTLSFNLGPHAQPITLYMDTGSDLVWFPCAPFKCILCEGKPNEPNASPPTNITRSVAVSCKSLACSAAHNLASSSDLCAMARCPLESIETSDCANFKCPPFYYAYGDGSLVARLYRDTLSLSSLSLRNFTFGCAHTALAEPTGVAGFGRGLLSLPAQLATLSPQLGNRFSYCLVSHSFDSDRVRKPSPLILGRYEEKEKEKISGGGMVEFVYTSMLENPKHPYFYTVGLIGISVGKRTIPAPEMLRRVNNRGDGGVVVDSGTTFTMLPEEFYNSVVDEFDRRVGRVNKRARKVEEKTGLAPCYYLNAVAEVPVVTLRFAGGNSSVVLPRKNYFYEFLDGSGERKGKRRVGCLMLMNGGDEGELSGPGATLGNYQQQGFEVVYELEEKRVGFAKRHCASLWERLNRDKN* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2267 476 PANTHER OS07G0603500 PROTEIN-RELATED 3 469 - -
Pvu3g2267 476 Pfam Xylanase inhibitor N-terminal 69 260 IPR032861 -
Pvu3g2267 476 PANTHER BNAA01G17170D PROTEIN 3 469 - -
Pvu3g2267 476 SUPERFAMILY Acid proteases 64 469 IPR021109 -
Pvu3g2267 476 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 324 335 IPR001969 GO:0004190|GO:0006508
Pvu3g2267 476 Gene3D Acid Proteases 59 260 IPR021109 -
Pvu3g2267 476 Pfam Xylanase inhibitor C-terminal 293 460 IPR032799 -
Pvu3g2267 476 Coils Coil 344 364 - -
Pvu3g2267 476 ProSiteProfiles Peptidase family A1 domain profile. 69 460 IPR033121 -
Pvu3g2267 476 CDD pepsin_A_like_plant 69 464 IPR034161 -
Pvu3g2267 476 Gene3D Acid Proteases 272 469 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2267 Pvu-Chr3 43702370 43703800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2267 40 467 Miscellaneous Gene Families AT1G77480 25.219 3.23e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2267 - - gmx:100805699 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2267 3 43702370 43703800 Pvu3g2267 3 43702370 43703800 ECH
Pvu3g2267 3 43702370 43703800 Pvu9g1673 9 23563688 23566524 ECH
Pvu2g0647 2 6951729 6952871 Pvu3g2267 3 43702370 43703800 PCT