Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2248 ATGGATTTGAAGTCCTCTCATGTTTCTCCTGTTCTCACTGACCCTGTTCCCGTCAACAAGTCAAGGCTTCGAATGCATTCTAGTCTGCTAGCTTATTCCCAGCAAGATTCACCTGTCTCTCCAGGGAAGTGCTCAAGAAGCAATTCAAGGAAAAGTACGGGGAGTGTCGATGATGTGAGGTCCAATGGTTGGTTGGATGCCATGAAGGCTTCTTCCCCTCCAAGGAAGAAGCTACTTAAAGGGTCCAGTGTTCAGGTTGCTTCAATTGACTTTGAGATTGAAGACTATTGTACATGGATGCTTGAATATCCTTCAGCACTAGACTCTTTTGAGAACATCGTTGACCTTGCTCAGAATAAGAAGATTGCCATGTTTCTAGATTATGACGGCACACTTTCACCGATAGTAGATGATCCGGATTGTGCCTTTATGTCCGAATCTATGCGTACAACTGTGAGAAGTGTGGCAACGTATTTCCCCACAGCAATCATCAGTGGAAGAAGCCGTGACAAGGTTTTTGATCTTGTTAAACTAACAGAGCTCTACTACGCTGGTAGTCATGGGATGGACATTATTGGCCCTGTTAGTGAGACTTTGTCCAAAAATCACCCAAATTGTGTAAAGTCTACAGACCATGAGGGAAAGGAAATAACTCTCTTTCAACCTGCGAGAGAATTCCTGCCTATGGTTGATGAGGTTTTTAGAACCCTCGTCGAGATTACTAAAGATATAGAAGGCGCAAAAGTTGAAAACCACAAATTTTGCGTTTCTGTACATTACCGTAATGTAGAGGAGAATAATTGGACAACAATTGGACAACTTGTCCATGATGTCTTGCAAAATTACCCTCGTTTACGTTCAACTCATGGACGGAAGGTTTTAGAAGTCCGTCCTGTGGTTGATTGGAATAAAGGAAAAGCTGTTGAGTTTTTACTTGAATCTCTAGGATTAAATGATAGTGATGATGTGCTTCCCATCTACATTGGAGATGATAAAACTGATGAAGATGCATTCAAGGTGCTGCGAGAGAGCAGTAGAGGTTATGGGATTTTGGTTTCGTCGGTGAGGAAAGAAAGCAATGCCTTCTACTCTCTCCGAGACCCCAGTGAGGTCATGAAATTTCTCCAACTCTTGGTGAACTGGAAGAGACAAGAAAGATAG 1161 0.4264 MDLKSSHVSPVLTDPVPVNKSRLRMHSSLLAYSQQDSPVSPGKCSRSNSRKSTGSVDDVRSNGWLDAMKASSPPRKKLLKGSSVQVASIDFEIEDYCTWMLEYPSALDSFENIVDLAQNKKIAMFLDYDGTLSPIVDDPDCAFMSESMRTTVRSVATYFPTAIISGRSRDKVFDLVKLTELYYAGSHGMDIIGPVSETLSKNHPNCVKSTDHEGKEITLFQPAREFLPMVDEVFRTLVEITKDIEGAKVENHKFCVSVHYRNVEENNWTTIGQLVHDVLQNYPRLRSTHGRKVLEVRPVVDWNKGKAVEFLLESLGLNDSDDVLPIYIGDDKTDEDAFKVLRESSRGYGILVSSVRKESNAFYSLRDPSEVMKFLQLLVNWKRQER* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2248 386 MobiDBLite consensus disorder prediction 34 60 - -
Pvu3g2248 386 CDD HAD_TPP 123 373 - -
Pvu3g2248 386 SUPERFAMILY HAD-like 123 383 IPR036412 -
Pvu3g2248 386 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 124 343 IPR006379 -
Pvu3g2248 386 TIGRFAM T6PP: trehalose-phosphatase 120 379 IPR003337 GO:0003824|GO:0005992
Pvu3g2248 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 1 385 IPR044651 GO:0004805|GO:0005992
Pvu3g2248 386 PANTHER TREHALOSE-PHOSPHATE PHOSPHATASE F-RELATED 1 385 - -
Pvu3g2248 386 Pfam Trehalose-phosphatase 125 369 IPR003337 GO:0003824|GO:0005992
Pvu3g2248 386 Gene3D - 122 210 IPR023214 -
Pvu3g2248 386 Gene3D - 220 386 IPR023214 -
Pvu3g2248 386 MobiDBLite consensus disorder prediction 34 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2248 Pvu-Chr3 43492471 43499532 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2248 109 375 Trehalose Biosynthesis Gene Families AT1G23870 27.208 1.53e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2248 K01087 - tcc:18606311 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2248 3 43492471 43499532 Pvu3g2248 3 43492471 43499532 ECH