Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2228 ATGGATCCAATCACAGCACATGGTCATTCCCTTCCCCCTCCTTTTCACACCAGAGATCTCCATCTGCACCACCAGCCGCAACAGCACCAATTCCAAACCTTAAACCAAGGCACCGACGACGAGCACAGCGGAAGCAGCAGCGCGCAGAAGAGGGAGCGCGAAGAGAACAACGGCAACAACGATGAAGGTGCAGGTGAGGCTGAGATAACAAGGAGACCTCGCGGGAGACCAGCCGGCTCCAAAAACAAACCCAAGCCACCCATTATCATCACTCGCGACAGCGCAAACGCCATGAGAACCCACATGATGGAGGTGGCAGACGGGTGCGACATCGTGGAAAGCGTGTCTGAGTTCGCCAGGAAACGCCAAAGAGGGGTTTGCATCATGAGTGGCACTGGCACAGTCACCAACGTCACTCTCAGGCAACCGGCTTCTTCCGGTGCGGTTGTCACTCTCCATGGAAGGTTCGAGATTTTGTCCCTCAGTGGATCGTTCCTTCCGCCGCCTGCGCCACCTGCTGCTTCCGGTTTGACCATTTATTTGGCCGGTGGCCAGGGACAGGTGGTGGGAGGGAGTGTGGTTGGGACACTGGTTGCTTCGGGGCCTGTGGTGATCATGTCTGCTTCGTTCAGCAACGCTGCTTATGAGAGGCTTCCTTTGGAGGATGAAGACCCTTCGCTGCAAATGCAAGGAGGTTCAATTGGGTCACCCGGTGCAAGTGGTGTTGGTCAGTCACAGCTTCTAGGAGGAGGAGATGCAGCTGCTCCACTTTTCCATGGTTTGCCTCCTAACCTTCTCAATTCTGTTCAAATGCCATCTGAGCCATTCTGGGCATCCAATCGCCCTCCCTTCTAG 855 0.5556 MDPITAHGHSLPPPFHTRDLHLHHQPQQHQFQTLNQGTDDEHSGSSSAQKREREENNGNNDEGAGEAEITRRPRGRPAGSKNKPKPPIIITRDSANAMRTHMMEVADGCDIVESVSEFARKRQRGVCIMSGTGTVTNVTLRQPASSGAVVTLHGRFEILSLSGSFLPPPAPPAASGLTIYLAGGQGQVVGGSVVGTLVASGPVVIMSASFSNAAYERLPLEDEDPSLQMQGGSIGSPGASGVGQSQLLGGGDAAAPLFHGLPPNLLNSVQMPSEPFWASNRPPF* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2228 284 MobiDBLite consensus disorder prediction 44 75 - -
Pvu3g2228 284 Gene3D - 98 230 - -
Pvu3g2228 284 Pfam Plants and Prokaryotes Conserved (PCC) domain 99 212 IPR005175 -
Pvu3g2228 284 MobiDBLite consensus disorder prediction 1 90 - -
Pvu3g2228 284 CDD DUF296 99 166 IPR005175 -
Pvu3g2228 284 MobiDBLite consensus disorder prediction 26 43 - -
Pvu3g2228 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 7 284 IPR014476 GO:0003680
Pvu3g2228 284 SUPERFAMILY AF0104/ALDC/Ptd012-like 95 227 - -
Pvu3g2228 284 ProSiteProfiles PPC domain profile profile. 95 231 IPR005175 -
Pvu3g2228 284 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 24-RELATED 7 284 - -
Pvu3g2228 284 PIRSF ESCAROLA 15 284 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2228 Pvu-Chr3 43233432 43235295 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2228 1 284 AT-hook Motif Nuclear Localized (AHL) Family AT2G45430 53.988 6.65e-84 253
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2228 - - gmx:100807581 459.914