Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2226 ATGGAGTCAAGTGGCGGTGTTAGCGGGGGCGTTACGGTGGTGGGATCGGATGCTCCGTCAGACTACCATGTAGCTCCGAGGACCGACAACCCAGCTCCCGCAAGCGGATCCACGACGCAAATTCCGGCGACGGCGGGGAGTGCTCCACCGCCACATCCACCGCATACGGCAGCGATGGAGGCGTCGCCGGCGACGATGCCGGCTAAAAAGAAGAGGGGCCGGCCGAGAAAGTACGCACCGGACGGCTCGGTGACCATGGCGCTGTCTCCGAAGCCGATATCTTCCTCCGCTCCGTTGCCGCCGGTGATCGATTTCTCGTCGGAGAATCGCGGAAAAATAAAACCAACCAGTTCCGTGAGCAAAACCAAATTTGAGTTGGAGAATATAGGTGAATGGGTTGCATGCTCAGTTGGTGCTAATTTCACTCCCCATATCATCACTGTTAATTCTGGAGAGGATGTTACTATGAAGGTAATATCATTTTCTCAGCAAGGGCCTCGAGCAATATGCATTCTTTCAGCTAATGGTGTCATATCAAGTGTCACACTTCGTCAACCCGATTCTTCGGGGGGTACATTGACATATGAGGGACGGTTTGAAATTCTATCTTTATCTGGTTCATTCATGCCCAGTGAAAGTGGAGGAACCCGAAGCAGATCCGGTGGCATGAGTGTATCTTTGGCAAGCCCCGATGGACGTGTTGTAGGTGGGGGAGTAGCTGGTTTATTGGTGGCTGCAAGTCCTGTGCAGGTAGTGGTAGGAAGTTTTCTGGCAGGAAACCAACATGAGCAGAAGCCAAGAAAACATAAACATGAAGTTATAACAAGTGTGACACCAGCAGCAGTTGTTCCCATCTCCACTCTTGATCCAATACCAATTCTCTCATCTGCAACTTCCATCCGCGGAGAAAGTTGGTCTGCTATGCCAGCAGAGGCCAAGAATAAACCAGCTGACATTAATGTGTCGCTTCCAGCAGGGTAA 981 0.5158 MESSGGVSGGVTVVGSDAPSDYHVAPRTDNPAPASGSTTQIPATAGSAPPPHPPHTAAMEASPATMPAKKKRGRPRKYAPDGSVTMALSPKPISSSAPLPPVIDFSSENRGKIKPTSSVSKTKFELENIGEWVACSVGANFTPHIITVNSGEDVTMKVISFSQQGPRAICILSANGVISSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPSESGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPRKHKHEVITSVTPAAVVPISTLDPIPILSSATSIRGESWSAMPAEAKNKPADINVSLPAG* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2226 326 Pfam Plants and Prokaryotes Conserved (PCC) domain 143 256 IPR005175 -
Pvu3g2226 326 MobiDBLite consensus disorder prediction 31 45 - -
Pvu3g2226 326 MobiDBLite consensus disorder prediction 1 116 - -
Pvu3g2226 326 CDD DUF296 142 233 IPR005175 -
Pvu3g2226 326 SUPERFAMILY AF0104/ALDC/Ptd012-like 140 259 - -
Pvu3g2226 326 Gene3D - 143 275 - -
Pvu3g2226 326 ProSiteProfiles PPC domain profile profile. 138 277 IPR005175 -
Pvu3g2226 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 9 324 IPR039605 GO:0003680
Pvu3g2226 326 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 9 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2226 Pvu-Chr3 43173859 43178812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2226 1 323 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 61.582 7.50e-130 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2226 - - gmx:100794202 557.755