Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2204 ATGGGAAAGCCAGCAACAGTAGCGGCTTCATTTCAGGCTAGTGAATGGATACCAGCCCATGCCACATTTTATGGTGACGAGAGTGCTTCTGCCACCATGGGAGGAGCATGTGGATATGGAAATTTGTTGATAAACGGTTATGGGACAGACACAGCTGCTTTGAGCTCGACATTGTTCAACGATGGATATGCATGTGGAACATGTTACGAGATAAAGTGTGTCCAATCTAGTGCATGCTTCTCCAATGTGGTTTCCACCACAGTGACTGCCACCAATATTTGCCCTCCTAATTGGGCCGAACCCTCTGATAACGGAGGGTGGTGCAACCCACCCCGTTCACATTTTGACATGTCCAAGCCCGCTTTCATGAAAATTGCACAGTGGAAAGCTGGAATCGTTCCTGTTATGTACCGCAGAGTGGCTTGCGTGAAGAGTTCGGGGCTACGATTCTCTTTCCAAGGAAATGGGTATTGGTTACTTGTGTATGTGATGAATGTGGGAGGAGGAGGAGACATTGCGAACATGTGGGTGAAAGGAAGTGGACCTGAGTGGATCAGCATGAGCCACAATTGGGGTGCTTCTTACCAAGCATTTGCAACTTTGAGTGGTCAATCTCTTTCGTTTAAGGCTACTTCTTACACTACCAAGGAGACTATAATAGCTTGGAATGCTGCTCCCACCAACTGGGGCGTAGGACTAACTTATTCCACCCAGGTCAACTTCAGTTAA 729 0.4746 MGKPATVAASFQASEWIPAHATFYGDESASATMGGACGYGNLLINGYGTDTAALSSTLFNDGYACGTCYEIKCVQSSACFSNVVSTTVTATNICPPNWAEPSDNGGWCNPPRSHFDMSKPAFMKIAQWKAGIVPVMYRRVACVKSSGLRFSFQGNGYWLLVYVMNVGGGGDIANMWVKGSGPEWISMSHNWGASYQAFATLSGQSLSFKATSYTTKETIIAWNAAPTNWGVGLTYSTQVNFS* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2204 242 SUPERFAMILY Barwin-like endoglucanases 9 165 IPR036908 -
Pvu3g2204 242 SMART dpbb_1 51 137 IPR007112 -
Pvu3g2204 242 PRINTS Expansin/Lol pI family signature 15 30 IPR007118 GO:0005576
Pvu3g2204 242 PRINTS Expansin/Lol pI family signature 33 51 IPR007118 GO:0005576
Pvu3g2204 242 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Pvu3g2204 242 PRINTS Expansin/Lol pI family signature 130 146 IPR007118 GO:0005576
Pvu3g2204 242 PRINTS Expansin/Lol pI family signature 184 198 IPR007118 GO:0005576
Pvu3g2204 242 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Pvu3g2204 242 Pfam Lytic transglycolase 51 137 IPR009009 -
Pvu3g2204 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 34 147 IPR007112 -
Pvu3g2204 242 Gene3D - 2 142 IPR036908 -
Pvu3g2204 242 PRINTS Expansin signature 46 60 IPR002963 GO:0009664
Pvu3g2204 242 PRINTS Expansin signature 86 96 IPR002963 GO:0009664
Pvu3g2204 242 PRINTS Expansin signature 105 122 IPR002963 GO:0009664
Pvu3g2204 242 PRINTS Expansin signature 122 135 IPR002963 GO:0009664
Pvu3g2204 242 PRINTS Expansin signature 146 158 IPR002963 GO:0009664
Pvu3g2204 242 PRINTS Expansin signature 158 179 IPR002963 GO:0009664
Pvu3g2204 242 PRINTS Expansin signature 193 214 IPR002963 GO:0009664
Pvu3g2204 242 PANTHER EXPANSIN-A15 3 241 IPR002963 GO:0009664
Pvu3g2204 242 Gene3D - 148 242 IPR036749 -
Pvu3g2204 242 SUPERFAMILY PHL pollen allergen 146 236 IPR036749 -
Pvu3g2204 242 Pfam Expansin C-terminal domain 149 226 IPR007117 -
Pvu3g2204 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 157 237 IPR007117 -
Pvu3g2204 242 PANTHER EXPANSIN 3 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2204 Pvu-Chr3 42940817 42942083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2204 1 242 Expansin Gene Family AT1G62980 64.463 1.56e-117 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2204 - - gmx:100781459 449.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2204 3 42940817 42942083 Pvu3g2204 3 42940817 42942083 ECH
Pvu3g2204 3 42940817 42942083 Pvu2g1575 2 29369190 29370828 PCT