Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2202 ATGGTGAGGGGGAAAACTCAGATGAAGCGCATCGAAAACGAAACCAGTAGGCAAGTCACCTTCTCCAAGAGAAGAAACGGCTTGCTTAAGAAGGCCTTTGAGCTTTCGGTGCTGTGCGATGCTGAAGTCGCTCTCATCATCTTCTCCACCAGAGGGAGGCTTTACGAGTTCTCCAGTTCAACTTCAAGTATAAACAAAACAGTTGAACGCTATCAAAGGAAAATCAAGGACGTTTGTGTCAACAACAACGGAATCCATGAAAATACACAGATTCTGAAGGACGGTGATATGAGCATGACAAAGAGAATCGAGCAGCTAGACAATTCCAGAAGGAAGCTTTTGGGAGATGAATTGGATCCATGCAGTATTGACGAGTTACGACAGGTAGAGAACCAGCTCGAACGCAGCTTGGAAAAAATTAGGGCAAGAAAG 432 0.4491 MVRGKTQMKRIENETSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGRLYEFSSSTSSINKTVERYQRKIKDVCVNNNGIHENTQILKDGDMSMTKRIEQLDNSRRKLLGDELDPCSIDELRQVENQLERSLEKIRARK 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2202 144 Coils Coil 123 144 - -
Pvu3g2202 144 PANTHER MADS-BOX PROTEIN SOC1 1 144 - -
Pvu3g2202 144 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pvu3g2202 144 SUPERFAMILY SRF-like 3 75 IPR036879 GO:0003677|GO:0046983
Pvu3g2202 144 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pvu3g2202 144 ProSiteProfiles K-box domain profile. 89 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu3g2202 144 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pvu3g2202 144 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pvu3g2202 144 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pvu3g2202 144 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pvu3g2202 144 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Pvu3g2202 144 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pvu3g2202 144 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pvu3g2202 144 Pfam K-box region 93 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pvu3g2202 144 PANTHER MADS BOX PROTEIN 1 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2202 Pvu-Chr3 42909872 42918665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2202 1 144 MADS-box Gene Family AT4G22950 68.750 6.25e-64 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pvu3g2202 K-box 8e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2202 - - gmx:100782713 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2202 3 42909872 42918665 Pvu3g2202 3 42909872 42918665 ECH