Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2201 ATGCAAGAAGCAGGGTTGGGAATGAATATGTTGAGCGCAGAAGTCTCAGCCGCCGCCGCCGACCACCACCACCGTCAAGTGAAGGCGGAGATAGCCACCCACCCACTTTGCGAACAGCTTCTCGCTGCACACGTCTCATGCCTCCGCGTCGCCACACCCATCGACCAGTTGCCCCTCATCGACGCTCAGTTATCACACTTCAACAATCTCCTCCGCTCTTACGCCTCACACTATTCCCATTCCCATGACCGACAAGAACTCGACAACTTCATGACACAATATTTGATCGTGTTATGCGCGTTGAAAGAGCAGCTTCAGCAACATGTGAGGGTGCATGCCGTGGAGGCTGTGATGGCCTGCCGTGATATTGAAAGCACCTTGCAAGCTCTGACAGGAGTGAGCTTGGGAGAAGGTTCAGGTGCAACAATGTCAGATGACGAAGAGGATTTTCAAATGGATGGGTCTTTAGATCAGTCTAGCGCTGACGGGCATGACATGATGGGATTTGGTCCATTGCTTCCAACAGAATCTGAAAGGTCCCTCATGGAAAGAGTTCGTCAGGAGCTTAAGATTGAGCTCAAGCAGGGTTTTAAGTCAAGAATTGAAGATGTTAGGGAGGAAATATTGAGGAAACGGAGAGCTGGGAAATTGCCTGGTGACACAACATCGGTTTTAAAGGCATGGTGGCAGCAACATGCTAAGTGGCCCTACCCAACTGAAGATGACAAGGCAAAGCTTGTGGAGGAGACAGGGTTGCAGCTGAAGCAAATCAACAATTGGTTCATCAACCAAAGGAAACGTAATTGGCACAGCAACTCTCAATCGGTGACCTCTCTGAAGTCCAAGCGCAAGAGGGATTATTCCCACTAA 870 0.5 MQEAGLGMNMLSAEVSAAAADHHHRQVKAEIATHPLCEQLLAAHVSCLRVATPIDQLPLIDAQLSHFNNLLRSYASHYSHSHDRQELDNFMTQYLIVLCALKEQLQQHVRVHAVEAVMACRDIESTLQALTGVSLGEGSGATMSDDEEDFQMDGSLDQSSADGHDMMGFGPLLPTESERSLMERVRQELKIELKQGFKSRIEDVREEILRKRRAGKLPGDTTSVLKAWWQQHAKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKRNWHSNSQSVTSLKSKRKRDYSH* 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2201 289 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 14 285 - -
Pvu3g2201 289 SMART KNOX1_2 25 69 IPR005540 GO:0003677|GO:0005634
Pvu3g2201 289 SMART KNOX2_2 77 132 IPR005541 GO:0003677|GO:0005634
Pvu3g2201 289 Gene3D - 207 282 - -
Pvu3g2201 289 ProSiteProfiles 'Homeobox' domain profile. 208 271 IPR001356 GO:0003677
Pvu3g2201 289 CDD homeodomain 211 272 IPR001356 GO:0003677
Pvu3g2201 289 Pfam KNOX1 domain 27 67 IPR005540 GO:0003677|GO:0005634
Pvu3g2201 289 ProSiteProfiles ELK domain profile. 188 208 IPR005539 GO:0003677
Pvu3g2201 289 SUPERFAMILY Homeodomain-like 210 275 IPR009057 -
Pvu3g2201 289 Pfam KNOX2 domain 81 131 IPR005541 GO:0003677|GO:0005634
Pvu3g2201 289 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 7 14 285 - -
Pvu3g2201 289 Pfam Homeobox KN domain 228 267 IPR008422 GO:0003677|GO:0006355
Pvu3g2201 289 SMART HOX_1 210 275 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2201 Pvu-Chr3 42880990 42888229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2201 1 284 Homeobox Transcription Factor Family AT1G62990 75.862 2.92e-162 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pvu3g2201 KNOX2 9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2201 - - gmx:100803130 528.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2201 3 42880990 42888229 Pvu3g2201 3 42880990 42888229 ECH
Pvu3g2201 3 42880990 42888229 Pvu2g1579 2 29431395 29438064 PCT