Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2194 ATGAGCACAAAATCAGTTGTAGCTGACAACAAGAATATATCCATCTCATATTTTCTTCTTTCTACTGTGTCTGAAAACGGGTTCTTCAATTTCACTGCTCAACCAAATCAATCCATTGCAAACGTTAATCCACAAATGAACCTTCTCAAACAATCATCTGACGAGTCAAACAACGGCTGCTACGTTTGCTCCTCCCCGGAAACAAGCTCCTCTAACCCTCCCAACGCCGTTCACTCCGACGAGGAACTACATGCATTAGCATCGGCTCGCCCCAAGAAACGTGCTGGGCGCCGAATCTTTAAGGAGACACGCCACCCCGTGTACCGAGGGGTGCGACAGAGGAACAACAACAAGTGGGTCTGCGAGATGCGAGTCCCCAATGACAAATCCACAAGGATTTGGCTCGGAACGTACCCAACCCCCGAGATGGCCGCACGAGCGCACGACGTTGCCGCGCTCGCGCTCCGAGGAAAGTCCGCTTGCCTCAACTTCGCCGACTCGGCGTGGCGGCTGCCCTTGCCGGCGTCGACAAATGCGAAGGAGATACGGCGAGTGGCCGGGGAGGCTGTTGTGGCGATTGCAGCGGAAGATAGTTGCGTCGAGCAATTAGAGAATGAGAATGTGAATGCCGTGGCTGACTGCGAAGTTAGCAGCAGTGGTCTCAGCATTGATGAAGATGGCAGTAGTAGCAAAGCCTTGCGGGTGTTTTGTGATTTGGATGAGATAACAATACCAGACGCATCAGGATTTGAAGAAATGCATGCGTGGCTTCAGAGCATGGCGGATAAGCCTTTGCGATCGCCTACTTTTGTAACATATGTTAGGGATTGGATCTCTGTTGAGGATGATGCTGAAGTTTCTCTGTGGAGCTTCTCCATCTGA 882 0.5136 MSTKSVVADNKNISISYFLLSTVSENGFFNFTAQPNQSIANVNPQMNLLKQSSDESNNGCYVCSSPETSSSNPPNAVHSDEELHALASARPKKRAGRRIFKETRHPVYRGVRQRNNNKWVCEMRVPNDKSTRIWLGTYPTPEMAARAHDVAALALRGKSACLNFADSAWRLPLPASTNAKEIRRVAGEAVVAIAAEDSCVEQLENENVNAVADCEVSSSGLSIDEDGSSSKALRVFCDLDEITIPDASGFEEMHAWLQSMADKPLRSPTFVTYVRDWISVEDDAEVSLWSFSI* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2194 293 MobiDBLite consensus disorder prediction 59 77 - -
Pvu3g2194 293 CDD AP2 108 167 IPR001471 GO:0003700|GO:0006355
Pvu3g2194 293 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 46 293 - -
Pvu3g2194 293 MobiDBLite consensus disorder prediction 59 78 - -
Pvu3g2194 293 SUPERFAMILY DNA-binding domain 107 167 IPR016177 GO:0003677
Pvu3g2194 293 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Pvu3g2194 293 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Pvu3g2194 293 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Pvu3g2194 293 ProSiteProfiles AP2/ERF domain profile. 107 165 IPR001471 GO:0003700|GO:0006355
Pvu3g2194 293 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 46 293 IPR045277 GO:0003700
Pvu3g2194 293 SMART rav1_2 107 171 IPR001471 GO:0003700|GO:0006355
Pvu3g2194 293 Pfam AP2 domain 106 157 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2194 Pvu-Chr3 42804542 42805711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2194 86 291 AP2-EREBP Transcription Factor Family AT4G25470 47.170 2.97e-53 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu3g2194 AP2 1.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2194 - - pvu:PHAVU_003G212800g 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2194 3 42804542 42805711 Pvu3g2194 3 42804542 42805711 ECH
Pvu3g2194 3 42804542 42805711 Pvu2g1585 2 29528341 29528991 PCT