Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2193 ATGGCTTCATCGTCATCTTCATCAAAGAGACATCCACTGTACCATGGAATCCGTTGCCGCGGAGGAAAATGGGTCACTGAAATCCGTGAGCCACGAAAAACCAACCGAATATGGTTGGGCACGTTCCTCACGCCGGAGATGGCCGCCGCCGCCTATGACGTGGCGGCGTTGGCCCTGAAAGGCGGGGAAGCGGTTCTCAACTTCCCGGACTCGATTGGCAGGTATCCAGTGCCCGCGTCCAAATCCCCTGCGGACATCCGCAGCGCAGCCATTGCTGCAGCCGAACTCATGAAGCCTGAAGCCAGCCACAACAACGCTAATGCAGTAGCTCAGTCTGATAACACAGAGGGTGATGGTTACTATAATGTTGCTGCTCCTTTGAATGAAACTGAGTTTGTCGACGAGGAAGCCATATTCTCCATGCCGAGTTTGTTGATCGACATGGCTGAGGGAATGTTGCTAACCCCTCCCAGAATGAGCTCACCCTCTGATTACTGGATCGAGAATTCTGGTGGAGAAAATTTGTGGAACTTTTGA 537 0.527 MASSSSSSKRHPLYHGIRCRGGKWVTEIREPRKTNRIWLGTFLTPEMAAAAYDVAALALKGGEAVLNFPDSIGRYPVPASKSPADIRSAAIAAAELMKPEASHNNANAVAQSDNTEGDGYYNVAAPLNETEFVDEEAIFSMPSLLIDMAEGMLLTPPRMSSPSDYWIENSGGENLWNF* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2193 178 ProSiteProfiles AP2/ERF domain profile. 13 69 IPR001471 GO:0003700|GO:0006355
Pvu3g2193 178 Pfam AP2 domain 14 61 IPR001471 GO:0003700|GO:0006355
Pvu3g2193 178 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Pvu3g2193 178 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 178 - -
Pvu3g2193 178 CDD AP2 12 71 IPR001471 GO:0003700|GO:0006355
Pvu3g2193 178 PANTHER ETHYLENE RESPONSE FACTOR 1 178 - -
Pvu3g2193 178 Gene3D AP2/ERF domain 13 70 IPR036955 GO:0003700|GO:0006355
Pvu3g2193 178 SUPERFAMILY DNA-binding domain 13 71 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2193 Pvu-Chr3 42784293 42784829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2193 2 178 AP2-EREBP Transcription Factor Family AT2G36450 48.108 2.65e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu3g2193 AP2 2.3e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2193 - - gmx:100793589 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2193 3 42784293 42784829 Pvu3g2193 3 42784293 42784829 ECH
Pvu3g2193 3 42784293 42784829 Pvu2g1586 2 29572213 29572719 PCT