Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2183 ATGTCATCATCTTCAGCAAGCAACACCTATGACGTGCCATGGGTGGAGAAGTATCGTCCCAACAAGGTCGCTGACATAGTCGGCAACGAGGACGCAGTCTCTAGACTGCAAGTCATTGCTCGCGATGGCAACATGCCCAATCTCATATTATCAGGTCCTCCTGGGACCGGAAAAACCACTAGCATACTAGCCCTCGCTCATGAGCTTCTTGGACCAAATTGCAAGGAAGGTGTTCTTGAACTCAATGCATCCGATGATAGAGGAATTGATGTTGTGAGGAACAAGATCAAGATGTTTGCTCAGAAGAAAGTGACCCTTCCCCCAGGGAGGCACAAGATAGTAATACTGGATGAAGCTGATAGTATGACCACAGGGGCACAACAAGCACTGAGAAGGACAATGGAGATATATTCTAACTCTACTCGTTTTGCTCTTGCTTGCAATACTTCAGCTAAGATTATTGAGCCCATTCAGAGTAGATGTGCCATAGTGCGGTTTTCACGGTTGTTAGATCAAGAGATACTTGGTCGACTCATGATTGTGGTTCAAGCGGAAAAGGTTCCCTACGTTCCTGAAGGACTTGAAGCCATCATTTTCACTGCCGATGGTGATATGAGGCAGGCATTGAATAACTTGCAAGCAACATACAGTGGGTTCCAATTTGTTAACCAAGCAAATGTTTTTAAGGTTTGCGACCAGCCACATCCACTGCATGTGAAGAATATGGTGCGTAATGTGATTGAAGGGAACTTTGATGAGGCTTGTTCGGGCCTCAAGCAACTGTATGATTTAGGATATTCTCCCACTGATATCATCACGACTCTTTTTCGTATCATAAAAAACTATGATATGGCTGAGTATCTGAAATTGGAGTTCATGAAGGAAACTGGGTTTGCTCATATGAGAATTTGTGATGGAGTTGGATCTTATCTTCAATTGTGTGGTTTATTGGCTAAGCTTTCCCTAGTTCGAGAGAATGCTAAAGCTGTATGA 993 0.4381 MSSSSASNTYDVPWVEKYRPNKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNCKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTTGAQQALRRTMEIYSNSTRFALACNTSAKIIEPIQSRCAIVRFSRLLDQEILGRLMIVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFQFVNQANVFKVCDQPHPLHVKNMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSLVRENAKAV* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2183 330 Gene3D - 171 233 - -
Pvu3g2183 330 PANTHER REPLICATION FACTOR C SUBUNIT 2 6 328 - -
Pvu3g2183 330 Gene3D - 5 169 IPR027417 -
Pvu3g2183 330 SMART AAA_5 44 176 IPR003593 -
Pvu3g2183 330 Pfam ATPase family associated with various cellular activities (AAA) 48 166 IPR003959 GO:0005524|GO:0016887
Pvu3g2183 330 SUPERFAMILY post-AAA+ oligomerization domain-like 233 325 IPR008921 GO:0003677|GO:0006260
Pvu3g2183 330 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 6 328 - -
Pvu3g2183 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 231 IPR027417 -
Pvu3g2183 330 CDD HLD_clamp_RFC 169 231 - -
Pvu3g2183 330 Gene3D - 234 326 - -
Pvu3g2183 330 Pfam Replication factor C C-terminal domain 234 319 IPR013748 -
Pvu3g2183 330 CDD AAA 27 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2183 Pvu-Chr3 42676645 42680013 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2183 10 329 Core DNA Replication Machinery Family AT1G63160 91.562 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2183 K10755 - gmx:100781364 633.639