Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2182 ATGGCCACCACAAGGTCACCTAATAATTCTTTCGAGGAAGGCGCCGATCCGACGCCGTTCCTCGGCACTTCTTCCGATGACTCTACCTCCGGCCGCCGTCTCCTCCGCCGCCCGAGCCTCCGCGAGGCGGCGCGCTTCCTGCGGCAGGCGAGCGGCCGCCGCTTGATGCGCGAGCCGTCGATGGTGGTGCGGGAGGCGGCGGCGGAACAATTGGAAGAAAGACAGAGCGATTGGGCCTATTCGAAGCCCGTGGTAGTCTTGGATATTCTCTGGAACTTCGCGTTCGTCGTAGCGGCCGCCACCGTCTTGATTCTCGGTCGCAACGAGAATCCGAATATGCCTCTGAGATTGTGGATTGTAGGCTACGCTATGCAGTGCGTTCTTCACGTCGCGTGCGTCTGCGTTGAGTACCGGAGGCGCCAGCGCCGCCGTGAACAGTCCAGCCTCGCCGTCGCTGTTGGTGGCAGCGGGGATTTGAGTTCGGCTTCAATGGAAGGCTCTAGACACTACGTGTCGTTGCCGCAGCTCGAGGACGACGGTATAAGTATGGCCAAGCATTTGGAATCAGCCAACACAATGTTTTCATTCATTTGGTGGGTTGTTGGATTCTATTGGATATCAGCTGACAATGAAGGTTTGGTCCAAGATTCTCCTCTGCTTTACTGGTTATGTATAGCCTTCCTGGGTTTTGATGTTTTCTTTGTCGTTTTCTGCATTGCACTAGCATGCATAATTGGTATAGCTGTTTGCTGTTGTCTTCCATGTATCATTGCACTCCTGTATGCAGTTGCAGACCAGGAAGGGGCATCAAAAGAAGACATTGAGCAATTGTCAAAATTCAAGTTCCAAAGAACCGAAACTAATGAGAAACTTGCTGGGAATACACAAGGAGCTGCTGGAGGGATAATGATGGAATGTGATACTGATTCTCCCATTGAACATGTTCTTTCTGATGAGGATGCGGAATGTTGCATCTGTCTTTCTGCTTATGATGACGGGGTTGAACTTAGGCAACTTCCTTGTGGCCACCATTTTCACTGTTCCTGTGTGGACAAATGGCTGCATATCAATGCTACTTGCCCCCTCTGCAAGTACAATATCTTGAAAAGTACCAGTCATGGTCAAGACGAAGTTTAG 1137 0.5136 MATTRSPNNSFEEGADPTPFLGTSSDDSTSGRRLLRRPSLREAARFLRQASGRRLMREPSMVVREAAAEQLEERQSDWAYSKPVVVLDILWNFAFVVAAATVLILGRNENPNMPLRLWIVGYAMQCVLHVACVCVEYRRRQRRREQSSLAVAVGGSGDLSSASMEGSRHYVSLPQLEDDGISMAKHLESANTMFSFIWWVVGFYWISADNEGLVQDSPLLYWLCIAFLGFDVFFVVFCIALACIIGIAVCCCLPCIIALLYAVADQEGASKEDIEQLSKFKFQRTETNEKLAGNTQGAAGGIMMECDTDSPIEHVLSDEDAECCICLSAYDDGVELRQLPCGHHFHCSCVDKWLHINATCPLCKYNILKSTSHGQDEV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2182 378 SMART ring_2 323 363 IPR001841 -
Pvu3g2182 378 MobiDBLite consensus disorder prediction 1 36 - -
Pvu3g2182 378 SUPERFAMILY RING/U-box 313 371 - -
Pvu3g2182 378 CDD RING-H2_RNF111_like 322 366 - -
Pvu3g2182 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 377 IPR013083 -
Pvu3g2182 378 PANTHER TARGET OF ERK KINASE MPK-1 3 378 - -
Pvu3g2182 378 ProSiteProfiles Zinc finger RING-type profile. 323 364 IPR001841 -
Pvu3g2182 378 Pfam Ring finger domain 322 364 IPR001841 -
Pvu3g2182 378 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 3 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2182 Pvu-Chr3 42668758 42673555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2182 18 373 C3H Transcription Factor Family AT1G68070 48.753 9.81e-118 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2182 - - gmx:100779757 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2182 3 42668758 42673555 Pvu2g1596 2 29668345 29673641 PCT