Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2169 ATGGTTTCTACGAGACGGAGTGGATCTCTCTCTGCCAACAACTCCAAACGATCTTCCTCATCGGAAAGCAAACCTCCTTCGCCGAAGCGTCAAAAGGTCGACAATGGCGGTTCGTCGGAGAAGCCGGTGTCGACACCGGCGGAGAATTCAAAGGATTTACGTACTCCGGAGCCCGTGCCTGATCCCGGGGAATGTGGCTCTGCCGACGTTCAGATCGCCGGAGCGGGTTCCGCCGATGTAGTGAGCTCCGGCAAGGTTGATGCTACGCCGGCTGTGCCCGTCACGGCACCGATTGCTGATGCTGCATGCCCGTCCTTCTCTTCGTGGAGTGTATATCAGAAACAGATTCCGAATATCGAGGGAGGACCGTGGTGTAGGTTCTTGTCTCAGTCTGCACAGAATCCTAATGTTGCTGTTTGCATACCCAATTTCACGATTGGTTCTAATAGAAGTTGCAACTTTGCACTGAAAGATCAAACTATAAGTGGAAATTTATGCAAGATCAAGCACACGCAGCGTGATGGGAGTGCTGTAGCTGTGCTAGAAAGTACGGGTAGCAAAGGATCTGTGCTAGTAAATGGGACGCATGTGAAGAAGAATACCAACTGTGTGCTTAACTCGGGTGATGAAGTGGTGTTTGGTGTTCTTGGAAATCATTCTTATATTTTTCAGCAACTAAATACTGAGGTTGCAATTAGGGGTGCAGAAGTTTCTAGTGGTGTTGGGAAATTTCTGCCGCTTGAAAGGAAAAGTGGAGACCCTTCAGCTGTGGCCGGGGCCTCTATTTTGGCTTCTCTTTCCATCAAACAGGACCTTACAAGATGGAAATCTCCAACTCATACCTCTAGTAAACCTCACCAGGGTTCTGATGTCTCGAGTCATCCTGTCCTTCATGATAGTACAGAAATTGAGCTTGACGGCTCAGAGTCAACTCCAAATGTGCATACTGATAAAGCAGCAGATGCTCAAACAAATGAGAAGAATTCAACAATGGATTGCAATCCGGATGCTGGTGCAGAGGCAGGCAATGTATTGGAAGAAAAAAATGGGACGCTGGACATGCAGGCAGCATCAACTTTGGGTACATCTGTGCGCTGTGCAGTGTTTAAAGAAGATGTTCACGCTGCTATTCTGGATGGAAAAGAAATAGACGTTTCTTTTGACAACTTCCCTTACTATTTAAGTGAGAGCACAAAAAATGTCTTGGTGGCTGCTTGCTTTATGCACCTAAGGCATAAAGAGCATGAAAAATTTACTTCAGATCTTACAACCATAAACCCTCGTATTCTACTCTCAGGACCTGCAGGGTCAGAAATATATCAGGAGATGTTGGCAAAGGCACTTGCAAAATACTTTGGAGCTAAGCTGCTCATATTTGATAGTCATTTGCTTTTGGGTGGTTTATCTTCCAAGGAAGCCGAGCTACTCAAAGATGGACTAAATGTTGAAAAATCCTTCAGCAGCACTAAACAAAGTCCTACAGCAACAAAAGTGGCTGGGAGCATGGATCCACCTGCTACTGAAACAGAGACACCTAGCTCTTCAAATGCACCTTCATTGGGCTTTGACTCTCAACCTAAGTTGGAAACTGATAACATGCCATCCGCCTCTGGGACAGCCAAAAGTTGTTTGTTCAAATTAGGTGATAGGGTGAAATTTAGCTGTTCATCTTCTTGTGGCGTATATCAAACATCTCCAAGGGGACCGTCTAATGGAGGTAGGGGGAAGGTTGTCTTACTATTTGATGATAATCCCTTGTCTAAAATTGGTGTGAGATTTGATAAGCCCATACCCGATGGAGTTGATCTTGGCGGTGCGTGTGAGGGAGGTCAAGGATTTTTCTGCAATGTCACTGATCTTCGCTTGGAAAGTAGTGCTGTAGAAGAACTGGACAAATTACTTATTCATTCGTTGTTTGAGGTTGTTTTTAGTGAGAGTAGAAGTGCACCATTCATTTTGTTCATGAAAGATGCTGAGAAGTCTATTGTAGGAAACGGAGATTCATATGCATTTAAAAGTAAGCTTGAAAATCTTCCAGACAATGTGGTCGTAATAGGTTCTCACACTCAAAATGACAGTCGTAAGGAGAAGTCACATCCTGGTGGTTTGCTTTTTACAAAATTTGGTAGCAATCAGACTGCCCTTCTGGACTTGGCTTTCCCTGATAGTTTTGGACGATTGCATGACAGAGGGAAGGAAGTTCCAAAACCAAATAGAACTTTGACTAAGCTCTTTCCAAATAAAATTATAATTCACATGCCTCAGGATGAGGCTCTTCTAGCATCTTGGAAGCAGCAACTGGATCGAGATGTTGAAACTCTCAAAATCAAAGGAAATTTACATCACTTGCGTGCAGTTTTGGGACGATGTGGAATGGAATGTGAAGGACTTGATACCTTATGCATTAAGGATCAGACACTTACAAATGAAAATGCAGAGAAGATAATTGGTTGGGCTTTAAGTCACCACCTCATGCAGAATTCAGAAGCTAAGCCTGATTCGAAGCTTGTATTATCATGTGATAGCATTCAGTATGGAATTGGGATCTTGCAGTCCGTCCAGAATGAGTCCAAGAGCCTGAAGAAGTCTCTTAAGGATGTAGTAACAGAAAATGAATTTGAAAAGAGGCTTTTGGCTGACGTTATTCCACCTAGTGACATTGATGTTACCTTCGATGATATTGGAGCTCTTGAAAAAGTCAAGGATACATTGAAGGAGTTGGTGATGCTTCCTTTACAGAGGCCTGAGCTTTTTTGCAAGGGGCAATTAACCAAGCCATGCAAAGGTATCCTATTATTTGGACCTCCTGGAACAGGTAAAACAATGCTTGCAAAGGCAATTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCTATGTCAAGTATTACATCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCGAGTAAAATTTCTCCTAGTGTTATATTTGTTGATGAGGTTGACAGCATGTTGGGTCGAAGGGAAAACCCAGGGGAGCATGAGGCCATGCGAAAGATGAAGAATGAATTCATGGTAAATTGGGATGGCTTACGTACCAAGGAAACAGAGAGAGTTCTTGTGCTGGCAGCCACTAACAGGCCTTTTGACCTAGATGAAGCTGTTATAAGGAGGATGCCAAGAAGATTGATGGTAAATTTGCCAGATGCTCCCAATAGAGCAAAAATATTGAAAGTCATACTGGCCCAAGAAGAATTGTCTCCTGATGTTGATTTGGATGCAGTTGCTACTATGACAGATGGATATTCCGGAAGTGATCTTAAGAATTTATGTGTTACTGCAGCACAACGGCCTATTAAAGAGATATTAGAAAAAGAAAAAAAGGAACGTGTTTCTGCTCTAGCAGAAGGTCAACCAGCTCCAGCGTTGCGTAGCAGTGGGGACATCAGATCATTAAACATGGAAGACTTCAAATATGCTCATCAACAGGTTTGCGCAAGTGTTTCTTCTGAATCAGTAAATATGACTGAGCTTTTACAATGGAATGAACTATATGGAGAAGGGGGTTCAAGAGTAAAGAAAGCACTGAGCTATTTCATGTGA 3585 0.4321 MVSTRRSGSLSANNSKRSSSSESKPPSPKRQKVDNGGSSEKPVSTPAENSKDLRTPEPVPDPGECGSADVQIAGAGSADVVSSGKVDATPAVPVTAPIADAACPSFSSWSVYQKQIPNIEGGPWCRFLSQSAQNPNVAVCIPNFTIGSNRSCNFALKDQTISGNLCKIKHTQRDGSAVAVLESTGSKGSVLVNGTHVKKNTNCVLNSGDEVVFGVLGNHSYIFQQLNTEVAIRGAEVSSGVGKFLPLERKSGDPSAVAGASILASLSIKQDLTRWKSPTHTSSKPHQGSDVSSHPVLHDSTEIELDGSESTPNVHTDKAADAQTNEKNSTMDCNPDAGAEAGNVLEEKNGTLDMQAASTLGTSVRCAVFKEDVHAAILDGKEIDVSFDNFPYYLSESTKNVLVAACFMHLRHKEHEKFTSDLTTINPRILLSGPAGSEIYQEMLAKALAKYFGAKLLIFDSHLLLGGLSSKEAELLKDGLNVEKSFSSTKQSPTATKVAGSMDPPATETETPSSSNAPSLGFDSQPKLETDNMPSASGTAKSCLFKLGDRVKFSCSSSCGVYQTSPRGPSNGGRGKVVLLFDDNPLSKIGVRFDKPIPDGVDLGGACEGGQGFFCNVTDLRLESSAVEELDKLLIHSLFEVVFSESRSAPFILFMKDAEKSIVGNGDSYAFKSKLENLPDNVVVIGSHTQNDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHDRGKEVPKPNRTLTKLFPNKIIIHMPQDEALLASWKQQLDRDVETLKIKGNLHHLRAVLGRCGMECEGLDTLCIKDQTLTNENAEKIIGWALSHHLMQNSEAKPDSKLVLSCDSIQYGIGILQSVQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIDVTFDDIGALEKVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAIATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKISPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKETERVLVLAATNRPFDLDEAVIRRMPRRLMVNLPDAPNRAKILKVILAQEELSPDVDLDAVATMTDGYSGSDLKNLCVTAAQRPIKEILEKEKKERVSALAEGQPAPALRSSGDIRSLNMEDFKYAHQQVCASVSSESVNMTELLQWNELYGEGGSRVKKALSYFM* 1195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2169 1194 MobiDBLite consensus disorder prediction 37 51 - -
Pvu3g2169 1194 CDD AAA 928 1061 - -
Pvu3g2169 1194 Pfam AAA+ lid domain 1083 1118 IPR041569 -
Pvu3g2169 1194 MobiDBLite consensus disorder prediction 506 535 - -
Pvu3g2169 1194 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 78 1194 - -
Pvu3g2169 1194 MobiDBLite consensus disorder prediction 1 26 - -
Pvu3g2169 1194 Gene3D - 123 231 - -
Pvu3g2169 1194 SUPERFAMILY SMAD/FHA domain 113 224 IPR008984 GO:0005515
Pvu3g2169 1194 MobiDBLite consensus disorder prediction 274 340 - -
Pvu3g2169 1194 Pfam FHA domain 145 214 IPR000253 GO:0005515
Pvu3g2169 1194 Pfam ATPase family associated with various cellular activities (AAA) 930 1059 IPR003959 GO:0005524|GO:0016887
Pvu3g2169 1194 Coils Coil 850 870 - -
Pvu3g2169 1194 Gene3D - 888 1169 IPR027417 -
Pvu3g2169 1194 MobiDBLite consensus disorder prediction 1 69 - -
Pvu3g2169 1194 SMART AAA_5 926 1063 IPR003593 -
Pvu3g2169 1194 PANTHER ATPASE FAMILY AAA DOMAIN-CONTAINING PROTEIN 1-A ISOFORM 1 78 1194 - -
Pvu3g2169 1194 MobiDBLite consensus disorder prediction 306 332 - -
Pvu3g2169 1194 Gene3D - 1062 1156 - -
Pvu3g2169 1194 ProSitePatterns AAA-protein family signature. 1033 1052 IPR003960 GO:0005524|GO:0016887
Pvu3g2169 1194 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 888 1169 IPR027417 -
Pvu3g2169 1194 MobiDBLite consensus disorder prediction 486 535 - -
Pvu3g2169 1194 CDD FHA 144 224 IPR000253 GO:0005515
Pvu3g2169 1194 ProSiteProfiles Forkhead-associated (FHA) domain profile. 144 197 IPR000253 GO:0005515
Pvu3g2169 1194 MobiDBLite consensus disorder prediction 274 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2169 Pvu-Chr3 42515780 42528428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2169 889 1121 Calmodulin-binding Proteins AT3G56690 40.084 3.34e-40 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2169 - - gmx:100816731 2112.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2169 3 42515780 42528428 Pvu9g1725 9 24376195 24388260 PCT