Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2163 ATGTGGAATCTCCATCATGGATTGTTTAAATTTTTTTTATGCAAAATAATTCATTTTTATATTTATGTTACTGTTTTTATGTTTCAGCCTCAACAACCACTTCTGTGTTACACAGTGGAGGCTATGGGGCCACTTTCTTGTACAAATGATGGCATATATCTTGCTGGAGCAGGTCTTTCTGGAACTGCTTATCTATGGGATGTGACCAATGGAAAATTGTTGAAGAGTTGGATGGCTAATAAGAAATCTATAAACTGCATGTTATTTTCATCTGACAACTCTTTTCTCATTTCTAGCTCAGATGATGGAATGATCTGTGTTTGGTCCCTGATTAGCTTGTTAGACATAGAAGAAACGAGAAGTTCGCCACCTCCAATGCTTTGTTTGTCAGGACATACGTCCTCCATAACAGGCCTTTTAACTACACCAAATAGTTACTTCTCAGTCTTAATATCAAGCTCCCTTGATGGCACCTGCAAGGTTTGGGATTTTATCTCAGGAGAACATATGCAAACTAAAGTTTATTCTTTGGCCATAACTGCAATTGCCCTTCACCAAAGAGAAAGTCTTTTGTTCTGCGGAACAGAAAAAGGAACAATATTTGTCGAGAAGCTCGATTTTGGTCGGAGAGAAGGTCCTTTTATTGGCACTGAAGTCCAGCCACTTGAATTGAAAGGACACAATGGAGCCATTACTGCCTTAACCTCATCTCGATCATGCCTAATATCTGCCTCTGAAGATTATTCGATTTGCACCTGGGACATCTCCAGTTTGCAAATCATTAGAAGGTTTAGTCTCCTAAAAGGGAGAGTAACCAATCTTGTGGTAGTTTCACTATCTTCGTTGCATTCTACACCAAGAAACAGGAGAGCCTCCAATGAATATAGCGTTTCTCAACTTGACAAGCATCCGCAAAACTCAATCCAGGGAATTGCCACCCTCCTTTCCTTATGTCCACCCTACAGAGGAAATCAAAGTGCCATTGATAGTTCTGGTTTATTGAAACAAAAGATTGTTGAAAAACAGAAAGTAGATATACCACCAGTGACAAAGTTAGAAATGACAGTGGAAGCAAGTGCAGAGAATCGTGAATGGGCAACAAGCATGGCAAAACATGTGATGGTTATAAACAAACAATTGAAGTCACACCTTTTAGACATGATGCAGCATAGATTGTTTCGTTCAAACAACACCAACTTGCGAAAAACTAGTAGAAAGAAACCCAAAATCTAG 1233 0.3909 MWNLHHGLFKFFLCKIIHFYIYVTVFMFQPQQPLLCYTVEAMGPLSCTNDGIYLAGAGLSGTAYLWDVTNGKLLKSWMANKKSINCMLFSSDNSFLISSSDDGMICVWSLISLLDIEETRSSPPPMLCLSGHTSSITGLLTTPNSYFSVLISSSLDGTCKVWDFISGEHMQTKVYSLAITAIALHQRESLLFCGTEKGTIFVEKLDFGRREGPFIGTEVQPLELKGHNGAITALTSSRSCLISASEDYSICTWDISSLQIIRRFSLLKGRVTNLVVVSLSSLHSTPRNRRASNEYSVSQLDKHPQNSIQGIATLLSLCPPYRGNQSAIDSSGLLKQKIVEKQKVDIPPVTKLEMTVEASAENREWATSMAKHVMVINKQLKSHLLDMMQHRLFRSNNTNLRKTSRKKPKI* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2163 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 224 263 IPR001680 GO:0005515
Pvu3g2163 410 SUPERFAMILY WD40 repeat-like 46 276 IPR036322 GO:0005515
Pvu3g2163 410 SMART WD40_4 166 204 IPR001680 GO:0005515
Pvu3g2163 410 SMART WD40_4 122 163 IPR001680 GO:0005515
Pvu3g2163 410 SMART WD40_4 32 67 IPR001680 GO:0005515
Pvu3g2163 410 SMART WD40_4 217 254 IPR001680 GO:0005515
Pvu3g2163 410 SMART WD40_4 70 109 IPR001680 GO:0005515
Pvu3g2163 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 77 110 IPR001680 GO:0005515
Pvu3g2163 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 129 172 IPR001680 GO:0005515
Pvu3g2163 410 PRINTS G protein beta WD-40 repeat signature 96 110 IPR020472 -
Pvu3g2163 410 PRINTS G protein beta WD-40 repeat signature 150 164 IPR020472 -
Pvu3g2163 410 PRINTS G protein beta WD-40 repeat signature 241 255 IPR020472 -
Pvu3g2163 410 Gene3D - 23 202 IPR015943 GO:0005515
Pvu3g2163 410 PANTHER WD-REPEAT PROTEIN 18 28 409 IPR045227 -
Pvu3g2163 410 PANTHER PROTEIN ROOT INITIATION DEFECTIVE 3-LIKE 28 409 - -
Pvu3g2163 410 Gene3D - 215 309 IPR015943 GO:0005515
Pvu3g2163 410 Pfam WD domain, G-beta repeat 223 254 IPR001680 GO:0005515
Pvu3g2163 410 Pfam WD domain, G-beta repeat 72 109 IPR001680 GO:0005515
Pvu3g2163 410 Pfam WD domain, G-beta repeat 127 163 IPR001680 GO:0005515
Pvu3g2163 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 77 110 - -
Pvu3g2163 410 ProSitePatterns Trp-Asp (WD) repeats signature. 241 255 IPR019775 -
Pvu3g2163 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 129 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2163 Pvu-Chr3 42461359 42464704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2163 54 266 U-box Gene Family AT1G04510 22.273 8.11e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2163 K14829 - gmx:102662801 509.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2163 3 42461359 42464704 Pvu3g2163 3 42461359 42464704 ECH