Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2162 ATGGCCTCTTGCATTTCTCTTTCTCTCTGTCCTCACACCTTCTGTTGCCGCCACCGTCCTTACTCTACGCGCCGTTCCCTTTCTTGCTCTCTCTCCTCTTCTTCCCTCCTCGATACGGATGGACATAAAGTTCTGCGTAAAAGATCGAGAAGGATAGAAGGTCCGAGAAAAAGCATGGAAGATTCTGTTCAACGCAAGATGGAGGAATTTTATGAAGGACGGGATGGGCCACCCCTCAGAGTTCTTCCCATTGGTGGGTTGGGTGAAATTGGGATGAATTGCATGCTTGTTGGTAACTATGATCGCTACATCCTCATCGATGCTGGTATCATGTTTCCAGACTATGATGAGCTTGGGATCCAGAAGATCATACCTGATACAACGTTTATAAGAAAATGGAGACACAAAATTGAAGCAGTTATTATAACACATGGTCATGAAGATCATATTGGTGCATTGCCTTGGGTCATCCCAGCATTAGATTCTCATACGCCAATTTTTGCGTCATCCTTTACAATGGAGCTTATAAGGAAGCGTTTGAAGGATCATGGTATTTTTGTTCCATCTCGACTGAAAGTTTTTAGAACGAGGAAGAAGTTTATGGCTGGGCCATTTGAAATAGAGCCTATCACAGTGACTCATTCTATCCCTGATTGCTGTGGCCTAGTGCTCCGATGTTCTGATGGTACCATTCTCCACACTGGGGATTGGAAGATTGATGAAACACCATTAGATGGTAAAGTTTTTGATCGGGAAGCTCTAGAGGAACTCTCTAAAGAAGGAGTCACATTGATGATGAGTGATTCAACAAATGTACTCTCACCTGGAAGGACAACCAGTGAATCTATTGTGGCAGATGCATTATTGAGGAATATTTCAGCAGCTAAAGGACGTGTTATAACGACCCAGTTTGCATCAAATATACATCGTCTTGGAAGTGTGAAAGCTGCTGCTGATTCAAGTGGTAGAAAGTTGGTATTTGTTGGCATGTCGCTAAGAACATATTTAGATGCAGCTTGGAAGGATGGAAAAGCTCCAATTGATCCATCAACTCTGGTGAAAGCGGAGGATATTGATGCTTATGCACCAAAGGATTTGCTAATTGTTACAACAGGGTCTCAAGCAGAACCACGTGCTGCCTTAAATCTTGCATCTTACGGAAGTAGTCATTCTTTCAAGCTAACAAAGGAGGATATTGTGTTGTATTCCGCCAAGGTTATCCCTGGCAACGAGTCTCGTGTTATGGAAATGCTAAACCGCATATCAGATATTGGATCAACTATAATTATGGGGAAGAATGAATGTCTGCACACATCTGGTCATGCGTATCGTGGAGAATTGGAGGAAGTGCTTAGAATTGTGAAACCACAGCATTTTCTACCCATACATGGAGAGCTCTTGTTCTTGAAGGAACATGAATTACTTGGAAAATCAACTGGCATTCGGCACACAACTGTTATTAAGAATGGAGAGATGCTTGGTGTTTCTCACTTGAGAAACAAAAGAGTCCTTTCAAATGGTTTCATTTCACTTGGAAAAGAGAATTTCCAGTTGATGTATAGTGATGGCGAGAAAGCATTTGGTACATCAAGTGAACTCTTTATTGATGAAAGAATGAGAATTGCATTAGATGGCATCATAGTTATTAGCATGGAAATCTTTCGCCCACAAAATTTAGAAAGTCCAGTTGAGAACACCTTAAAAGGAAAAATAAGAATTACCACAAGATGCCTGTGGCTTGACAAGGGTAAGCTGTTGGATGCACTCCATAAAGCTGCTCATGCTGCCCTTTCAAGCTGCCCCGCGAGCTGTCCACTGGCTCATATGGAAAGAATTGTGTCTGAGGTGGTGAGGAAAATGGTGAGGAAGTACAGTGGCAAACGGCCTGAAGTTATTGTCATTGCCGTAGAAAATCCTGCAGCTGTTCTTGCTAGTGAGATAAACATGAAGCTGTCTGGAAAATTTCACATGGATGGAACATCGGCATTGAAAAAAGTGGTGGTTGGACGTGGGAAAGAAAATCAGAGAACCAAAACGCAAATAAGAGAACGAATTGATGTCGGTGGTATACTACCTACTGAAGACATTGCTATCTCAAGTGGAGTTGAGGATGACTTATCGGATGCGGAAAATTCAGATGATTTTTTTAAACCACTTGTTGGATCCTCTCCAGTTGAGAAGTCAATTAAAGCTAACAATGGTTATGTTCCACAAAAGGAGAAGCCATCCCCTTTTAAGGATGGTAGTTCTGAAGACACTGAAGAAGAATGCAATTCTGTAAATACATCAAATTCCGAACCTAAATCTTCAAAATCAGCAAAGAAAAATAAATGGAAACATGATGAAGTTAAGAAGCTTATTGGCATGCGTGGGGAGATGAATGACCGATTTCAAGTTGTGAAAGGAAGGATGGCCCTCTGGGAAGAAATATCTCAGAATTTGTTGTCTAATGGGATCAGCAGAAGTCCTGGGCAGTGTAAATCTCTCTGGACATCTCTGTTACAGAAATACGAGGAGGTGAAGAATGAGAAAAATGGCAAGAAGAAATGGCCGTATCTTGAGGAAATGGAAAGGATTCTGTCTGATAGCGAGACACTGGCATCTAAATGA 2610 0.4169 MASCISLSLCPHTFCCRHRPYSTRRSLSCSLSSSSLLDTDGHKVLRKRSRRIEGPRKSMEDSVQRKMEEFYEGRDGPPLRVLPIGGLGEIGMNCMLVGNYDRYILIDAGIMFPDYDELGIQKIIPDTTFIRKWRHKIEAVIITHGHEDHIGALPWVIPALDSHTPIFASSFTMELIRKRLKDHGIFVPSRLKVFRTRKKFMAGPFEIEPITVTHSIPDCCGLVLRCSDGTILHTGDWKIDETPLDGKVFDREALEELSKEGVTLMMSDSTNVLSPGRTTSESIVADALLRNISAAKGRVITTQFASNIHRLGSVKAAADSSGRKLVFVGMSLRTYLDAAWKDGKAPIDPSTLVKAEDIDAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSFKLTKEDIVLYSAKVIPGNESRVMEMLNRISDIGSTIIMGKNECLHTSGHAYRGELEEVLRIVKPQHFLPIHGELLFLKEHELLGKSTGIRHTTVIKNGEMLGVSHLRNKRVLSNGFISLGKENFQLMYSDGEKAFGTSSELFIDERMRIALDGIIVISMEIFRPQNLESPVENTLKGKIRITTRCLWLDKGKLLDALHKAAHAALSSCPASCPLAHMERIVSEVVRKMVRKYSGKRPEVIVIAVENPAAVLASEINMKLSGKFHMDGTSALKKVVVGRGKENQRTKTQIRERIDVGGILPTEDIAISSGVEDDLSDAENSDDFFKPLVGSSPVEKSIKANNGYVPQKEKPSPFKDGSSEDTEEECNSVNTSNSEPKSSKSAKKNKWKHDEVKKLIGMRGEMNDRFQVVKGRMALWEEISQNLLSNGISRSPGQCKSLWTSLLQKYEEVKNEKNGKKKWPYLEEMERILSDSETLASK* 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2162 869 SUPERFAMILY Metallo-hydrolase/oxidoreductase 79 493 IPR036866 -
Pvu3g2162 869 ProSiteProfiles Myb-like domain profile. 770 834 IPR001005 -
Pvu3g2162 869 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 435 477 IPR011108 -
Pvu3g2162 869 Gene3D - 83 495 IPR036866 -
Pvu3g2162 869 CDD RNaseJ_MBL-fold 82 493 - -
Pvu3g2162 869 PANTHER RNA-METABOLISING METALLO-BETA-LACTAMASE 1 869 - -
Pvu3g2162 869 MobiDBLite consensus disorder prediction 755 769 - -
Pvu3g2162 869 Gene3D - 778 839 - -
Pvu3g2162 869 PANTHER RIBONUCLEASE J 1 869 - -
Pvu3g2162 869 MobiDBLite consensus disorder prediction 731 777 - -
Pvu3g2162 869 CDD GT1 780 841 - -
Pvu3g2162 869 Pfam Myb/SANT-like DNA-binding domain 776 859 IPR044822 -
Pvu3g2162 869 SMART Lactamase_B_5a 91 288 IPR001279 -
Pvu3g2162 869 Pfam Beta-lactamase superfamily domain 103 238 IPR001279 -
Pvu3g2162 869 Gene3D - 280 430 IPR042173 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2162 Pvu-Chr3 42420332 42434949 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2162 778 860 Trihelix Transcription Factor Family AT1G13450 36.471 5.73e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pvu3g2162 Lactamase_B_2 2.2e-10 CL0381
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2162 - - gmx:100814619 1516.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2162 3 42420332 42434949 Pvu9g1728 9 24402762 24413034 PCT