LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu3g2159	ATGACTTTCGCCCTGTACAATTTTAATATATCATATATAATAAACGGGGAAACGCGTGGAATCCAGCAAATAATTGATAAGATTGCCGCCTCTGTTGAAACGGGATACACACTGTTGTGTTTTTATTATTTAAGTGGAGAAAGGGCAATAGAATCACACAATAAACGCGTCAAGGAAGGCGGCTTCTCTCGTCTCTCTCTGTTTTCTGCTTCAGCCTTTCTCCTTTCGCTTGCTTTTCGTGTCGCCGGGCGAAAAAGTGTTTCGCTGAGAAGAGACTTTTTCAAATACAGTTCCACCAAGGGGTCTGATCACTCTAAGAATGACTCTTTCGGCGTGGAATTGGATGGATCTCGCTGCCAAGTCATTGCTCGTTCCGATGGGCTTCGTGGTGGGAAAGAGGAGAGAGAACAAGGCGAGATCTGTGTTGAAGATGGGGAATATGAGGGTGCCTATGATTTACCACCGCCGGAGAAGAAAAGGAAGTTTTCTCCAATCGTATGGGACCTAGCAGAGAAGAAAGAAAGAATCTCGCCTGAGAGCCGGATCTCTGAGACTGTTGCTCCGTCTCCTCCTCGTCCATCTCAACTGAACAGTTATGGAGCTAAAGGTGTTGATTCACATGATCTAATGGAAGAATCTTTACCAGATTCTCGAAGCGACAGACTCGATGCGGGGGAAGAGAGTTATCTGCCAGAATGGACTATCACAAAGTCAAGATGGGCTTGTGATGATGGTCACTCACCCACGACTGCTGATGATAAATTCAATCATGGCAAAGGGATCTCCAGTCCTGAACTAGGTGAATTCCACCGCGGTGGATCTTCAGAGAGCACCGTCACTAGATCATCAGGAAGCACTGGAAGAGATCATTATATGGGTCTTTCTACTGATGACGCCGATTCTGAAAATGATTTCCGTATGGACTCTATTGTCGATGTCGAGGAATCAGGTGACGTTGGTGATTATCCCTCGGATTCTGAAGAGGGTTGTGGATTGATGCCTGTGCAGAGAAATATAAACATGCTTCAAAGTTGTAGAAGTGTGTGCGAATTTGAGATGATTAAGAAAATAAATGAAGGAACTTATGGTGTTGTCTATAAAGCCAGGGATAAGAAAACTGGAGAATTAGTCGCATTGAAGAAGGTGAAGATGAATATAGAGAGGGATGGCTTTCCGATGTCATCCTTGAGGGAAATAAACATTCTCTTGTCTTTTAACCACCCCTCAATTGTGAATGTCAAAGAAGTAGTTGTAGATGATTTTGACGGTACTTTTATGGTAATGGAATACATGGAGTATGACCTCAAGGGAATGATGGAGGTTAAGAAACAGCCTTTTAGCATTAGCGAAATTAAATCCTTGGTAAAGCAACTTCTTGAAGGTGTCAAGTATCTCCATGATAACTGGGTTATCCATAGGGACTTGAAGTCATCAAACATTCTACTGAACCATGACGGGGAGCTTAAAATATGCGACTTTGGGTTGTCAAGGCAGTATGGAAGCCCTCTGAAGCCATATACTCCTGTTGTGGTTACACTATGGTACAGAGCACCTGAACTTTTGTTGGGCGCTAAAGAATACTCAACAGCAATTGACATGTGGTCAGTGGGTTGCATAATGGCTGAATTAATTGCCAAGGAGCCTCTGTTCAGGGGTAAAAGTGAACTTGAACAACTTGATCAGATTTTTCGAACCCTGGGTACACCCGATGAGAAAATTTGGCCAGGATTATCCAAATTACCTGGGGCTAAAGCAAAGTTTGTCAAGCAACCGTTTAATATGCTAAGGAAGAAGTTTCCAGCTGCATCATTTACTGGTTTGCCAGTTTTATCTGAGCTGGAATTTGACTTGTTGAAGAAGCTTTTAACTTATGACCCCGAAGAGAGGATTACTGCAGAAGATGCTCTCCTTCATGATTGGTTCTATGAAGCCCCTCCTCCCAAATCTGATTTCAAGCCTATTTTTCCTTCTTGGAGGTGCTAG	1983	0.4322	MTFALYNFNISYIINGETRGIQQIIDKIAASVETGYTLLCFYYLSGERAIESHNKRVKEGGFSRLSLFSASAFLLSLAFRVAGRKSVSLRRDFFKYSSTKGSDHSKNDSFGVELDGSRCQVIARSDGLRGGKEEREQGEICVEDGEYEGAYDLPPPEKKRKFSPIVWDLAEKKERISPESRISETVAPSPPRPSQLNSYGAKGVDSHDLMEESLPDSRSDRLDAGEESYLPEWTITKSRWACDDGHSPTTADDKFNHGKGISSPELGEFHRGGSSESTVTRSSGSTGRDHYMGLSTDDADSENDFRMDSIVDVEESGDVGDYPSDSEEGCGLMPVQRNINMLQSCRSVCEFEMIKKINEGTYGVVYKARDKKTGELVALKKVKMNIERDGFPMSSLREINILLSFNHPSIVNVKEVVVDDFDGTFMVMEYMEYDLKGMMEVKKQPFSISEIKSLVKQLLEGVKYLHDNWVIHRDLKSSNILLNHDGELKICDFGLSRQYGSPLKPYTPVVVTLWYRAPELLLGAKEYSTAIDMWSVGCIMAELIAKEPLFRGKSELEQLDQIFRTLGTPDEKIWPGLSKLPGAKAKFVKQPFNMLRKKFPAASFTGLPVLSELEFDLLKKLLTYDPEERITAEDALLHDWFYEAPPPKSDFKPIFPSWRC*	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pvu3g2159	660	PANTHER	CELL DIVISION PROTEIN KINASE	168	659	-	-
	Pvu3g2159	660	MobiDBLite	consensus disorder prediction	177	223	-	-
	Pvu3g2159	660	Gene3D	Transferase(Phosphotransferase) domain 1	433	652	-	-
	Pvu3g2159	660	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	470	482	IPR008271	GO:0004672\|GO:0006468
	Pvu3g2159	660	PANTHER	CYCLIN-DEPENDENT KINASE	168	659	-	-
	Pvu3g2159	660	SUPERFAMILY	Protein kinase-like (PK-like)	345	646	IPR011009	-
	Pvu3g2159	660	Gene3D	Phosphorylase Kinase; domain 1	335	432	-	-
	Pvu3g2159	660	Coils	Coil	660	660	-	-
	Pvu3g2159	660	MobiDBLite	consensus disorder prediction	205	223	-	-
	Pvu3g2159	660	MobiDBLite	consensus disorder prediction	273	290	-	-
	Pvu3g2159	660	Pfam	Protein kinase domain	351	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu3g2159	660	ProSiteProfiles	Protein kinase domain profile.	351	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu3g2159	660	MobiDBLite	consensus disorder prediction	244	304	-	-
	Pvu3g2159	660	MobiDBLite	consensus disorder prediction	182	201	-	-
	Pvu3g2159	660	SMART	serkin_6	351	641	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pvu3g2159	660	CDD	STKc_CDC2L1	345	641	IPR045267	GO:0004674\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu3g2159	Pvu-Chr3	42389713	42394577	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu3g2159	346	647	Core Cell Cycle Gene Families	AT5G10270	44.654	1.38e-84	273

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-PITSLRE	Pvu3g2159		Pkinase	3.2e-73	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu3g2159	K08818		-	gmx:100788840	892.493