Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2154 ATGGCAACCGCTTCCCGCTTGTTCGTGATCCCGGCGGCGAGGCCCGCTCTCGCCAAAACCATATTCTTCATGTCCTCTTGTTCAGCTCGCACGCTCGAACCGTGCGAGCCGCCACATTCCCCTGCGCGCTCGGAGGAAGAATCGCGAAACGTGAGGGTTTGGGCATGGTGGGACTTCAAGAACTGCCACGTGCCCCTGGGTTTCGACGCTTCCAAAGTCGCACCGGCAATAATGGAGGCAGTGAGAGCAAACGGAATCAAAGGCCCTCTCAACATCACCGCTTTCGGCGACGTTCAACGACTCCCCCGGGCACACCAGGAAGCACTCGCCTATACCGGCGTTCGCTTTATCCACGTCTCCGATGAGGGAAGAAACAGTATCGATATTCTCGTTGACCTAATGTATTGGGTTTCTCAGAACCCTCCGCCGGCGCACATATTTTTGATATCCGGCGATAGAGACTTCGCTGGCACGTTACACCGCTTGAGAATGAGTAATTACAATATCTTGCTCGCTACGCCGGAGAAAACTCCCAGTGTTCTCCACAGTGCTGCTACTATAGCCTGGCTGTGGCCTTCGTTGCTCAACGGAGAAAATCTTGCTGGAAAGGTCCTCAACCACCCTCCTGATGGACCTGTTGGGTCTTGGTATGGAAGCTACAACGAGCCGGTGACGGTGGAGGATCCGGCGACGGAAGAACCGGTCTCAGTTGCAGCTCCGCAGGCTACCTCGTTACCCAATGTGGAGGTCTATGGGCCTTCCCTGAGCTCGGTTCCTAAGTCAGTTGTGAGGAAGGTTTGGAATATTTTGAGTTTGCATCCAGAAGGGATATACATTACCAATCTTCGCGCTGAGTTGGTGAAAAATGATGTCCGTTTGGATAGGAATTTGTATGGACATAAAAAGTTTTCCCGCTTTCTGTTGTCGTTGCCACGGGTAGATCTTCGGGCCGGTGGTGATGGTCATTTTAGTGTACATTTGGGTCCTTTGGAATCCATGGAACAATGTGAGAACAGCTCTTTGGAATCAACAATTTCTGGTGCTAAGAATGAGGAGAAAGGATGTGCAGCGGCTCCAAAGCTAAATGGTGAGGGTAAAAGTAAGGTTAGGGATGCTGATGAAAAATTGTCAACTGCTCCGGTCTCTGAAAGGAGTATGACCGACGATTTAAAATCAGTACAACCGGGGACTTCAAAAGGGAGACCTGTTGAGGAAAATGAGTTGCGGAAGTCTGCTGTGGCTAATTCTCCTCAGTCAGAAGCTCAACTGCCACACAAGGACACCAAAGGTTCCAAAACTAAGATGAATACCTTAAACAAGAGTTCTAAAAAATTGTCTGATATTAACACTGTTAGGTCTAAAGTTGCTGGTATGGAAAAACATACAACTAAAGAGAATCACTCTGCTAGAAATGGTCAATCGATGGTGGAAAGCAATGTTATGGCAAATTATGTGTCTGATAGTATTGAAGCAAAGAATAAATGTGAGAATCGAACTAGAAAGGAGGTTGACGAAGTTTTTCCAAGCCTATCCTCACTAATTGATGATGGCTCTGAGGCTGCCCAAAAGCCTAGCGGAAGTGCTGAAACTAATAAAAGAAGTCCAACTCTGTTTCACTGGATTAGAAGGTGGTGGCCATTTGGGAAAAACATTGAAAAGTATGATGATTTGACGGTTCATCAGAGGGAGGGGGTTAGTCATGTTGAGGATTCGAAGTTATCTGAACTGGAGAAGACACTTAGTCAGTCTGAAGAGGCCAAATCATCTGAACTGGATCATACGTTAAGTCAATCAGAAGAGCCCAAGTTATCAGAACTGGATCAGAATGTTAGTCATCCCGGAAAGCCTGAGTTATTTTCCAGTCCTTCCTTTTGGAATGATATGGAATCTTCTATTTTTTCACCCAAAGGATCACTTCTTTTCTCCCATTCAAGAAGCAGGGAGGATGTGGCGCAAAGATTACAGAATGAAGGACCCCTGCTTCTCAGATCACTCCCCGAAAAAGATATCCTTCAATTGGTTGAAATGTTAATAGAAGACAAAAAATGGTTGGAGGAAAGGCCCTCCCAAACATTTCCTTTTAAGCTAATTCAGCCAGTTCATAAGAATTTATCGGTGGACCAATCCCATGTTACCAATGGTTTGAGATCTCTCTTTCTAAACAGAACATCACAATCGAACTTGCAAAAATCTTTAGAACATGATGTGGGGAAACACAATCAGAGTGTTTCTCATACACGCATTTCTGCGGCAGCGACTGAAACAAAATATATTGAGAGATCTAGAAATGATATATTAGATGACTGTCAGAAACTTGTGAATGAGATAGTAAGGGAACACCCAGAGGGATATAATATTGGTTCTTTCCGAAGACTATTTGTTGATAGGTATGGCTATCATCTTGATATCCAGAAGCTTGGTTATCAAAAATTGGCAGCCTTGTTACAGATAATGCCTGGGGTTAAATTTGAGTCCACTTACATTTTTCCTTCTGTTCCTGCTGTCTGTGATTCTGATTTCGATACTTCTATCCCCAAAACTCAAGCAACCACTGATAATCATGCAGTCTCCAACTCTGATAGTGAATTATCTGAGTCAACCTCTGAAGATCATGGCACGGAATCTCCGTGGGAGGAGTTAGGTCCTGTTTCTAACAAAAATTCCGACAAGACTGGTTTGGGTTTAAATTCATGTCAGAAAGTTATGGAACTGGATACATCAAAATCAAAGCATCCTGGTTATGAACTTGTTGTATCAGATGACGATACTTCTGCATCTGAAGGAGATGACTCTTGTTTAACTCAATCTGAAGAGCAGAGGAAGTCAAATTGTAATGAACGGGACAGTTCGTTTTGGCAAGCTATGGATTTCTGGCACAGCTGCAAGGAAGAAGAGAATAGTGTCAAGAAGTCGGACAATGTTGACAGCTTGGGTGCTTCTCTGGTTGATATTTTAGATTCATCCACTGAGTCGACCAGTGGTACCATTTCTGAAATTCCTTCATCAAATTACAGAGATAATATTGTCAATAAGTCAGACAATGTTGACAGTTTGAATGGTTCTCTGGCTGATATTTTTAATTCATCCCCTGAACCGACCTGGGTTACCCCTTCCAAAACATCTACATCAAATCACAGAGAGAAACAAAGATCTCACAAGAACTATTCCTTCGTTGCTGATCCAGTCTTACCTAACAAGGACAAGCTGATTGGTGACTTCAAGAAAACAGATGAGTCAAAGATGCAAAAACAGAGGAGTTCCTTGTGCAAGTAG 3273 0.4415 MATASRLFVIPAARPALAKTIFFMSSCSARTLEPCEPPHSPARSEEESRNVRVWAWWDFKNCHVPLGFDASKVAPAIMEAVRANGIKGPLNITAFGDVQRLPRAHQEALAYTGVRFIHVSDEGRNSIDILVDLMYWVSQNPPPAHIFLISGDRDFAGTLHRLRMSNYNILLATPEKTPSVLHSAATIAWLWPSLLNGENLAGKVLNHPPDGPVGSWYGSYNEPVTVEDPATEEPVSVAAPQATSLPNVEVYGPSLSSVPKSVVRKVWNILSLHPEGIYITNLRAELVKNDVRLDRNLYGHKKFSRFLLSLPRVDLRAGGDGHFSVHLGPLESMEQCENSSLESTISGAKNEEKGCAAAPKLNGEGKSKVRDADEKLSTAPVSERSMTDDLKSVQPGTSKGRPVEENELRKSAVANSPQSEAQLPHKDTKGSKTKMNTLNKSSKKLSDINTVRSKVAGMEKHTTKENHSARNGQSMVESNVMANYVSDSIEAKNKCENRTRKEVDEVFPSLSSLIDDGSEAAQKPSGSAETNKRSPTLFHWIRRWWPFGKNIEKYDDLTVHQREGVSHVEDSKLSELEKTLSQSEEAKSSELDHTLSQSEEPKLSELDQNVSHPGKPELFSSPSFWNDMESSIFSPKGSLLFSHSRSREDVAQRLQNEGPLLLRSLPEKDILQLVEMLIEDKKWLEERPSQTFPFKLIQPVHKNLSVDQSHVTNGLRSLFLNRTSQSNLQKSLEHDVGKHNQSVSHTRISAAATETKYIERSRNDILDDCQKLVNEIVREHPEGYNIGSFRRLFVDRYGYHLDIQKLGYQKLAALLQIMPGVKFESTYIFPSVPAVCDSDFDTSIPKTQATTDNHAVSNSDSELSESTSEDHGTESPWEELGPVSNKNSDKTGLGLNSCQKVMELDTSKSKHPGYELVVSDDDTSASEGDDSCLTQSEEQRKSNCNERDSSFWQAMDFWHSCKEEENSVKKSDNVDSLGASLVDILDSSTESTSGTISEIPSSNYRDNIVNKSDNVDSLNGSLADIFNSSPEPTWVTPSKTSTSNHREKQRSHKNYSFVADPVLPNKDKLIGDFKKTDESKMQKQRSSLCK* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2154 1090 ProSiteProfiles OST-type HTH domain profile. 765 839 IPR025605 -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 1027 1042 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 515 532 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 434 448 - -
Pvu3g2154 1090 Gene3D - 760 827 IPR041966 -
Pvu3g2154 1090 Pfam NYN domain 52 185 IPR021139 GO:0004540
Pvu3g2154 1090 ProSiteProfiles OST-type HTH domain profile. 258 329 IPR025605 -
Pvu3g2154 1090 PANTHER LIMKAIN B LKAP 26 985 IPR024768 GO:0005777|GO:0010468|GO:1903231
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 846 894 - -
Pvu3g2154 1090 Pfam OST-HTH Associated domain 645 694 IPR025677 -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 511 532 - -
Pvu3g2154 1090 PANTHER EMB|CAB71880.1 26 985 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 912 940 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 1067 1084 - -
Pvu3g2154 1090 CDD LOTUS 766 821 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 846 863 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 564 615 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 564 600 - -
Pvu3g2154 1090 CDD PIN_limkain_b1_N_like 52 174 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 880 894 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 364 378 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 1027 1090 - -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 356 448 - -
Pvu3g2154 1090 Pfam OST-HTH/LOTUS domain 767 820 IPR025605 -
Pvu3g2154 1090 Pfam OST-HTH/LOTUS domain 265 322 IPR025605 -
Pvu3g2154 1090 MobiDBLite consensus disorder prediction 380 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2154 Pvu-Chr3 42345016 42349154 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2154 55 197 C2H2 Transcription Factor Family AT5G61190 44.138 4.09e-34 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2154 - - pvu:PHAVU_003G208800g 2175.98