Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2145 ATGGAAGGCTCTGAATCCGATTCTGCGCCACTTTCCATTTCCAATGGCGAAGATCCCCAATTGGGGGCTTCTTCCCCCCCTCCTCCTCCTCCTCCACCGTCAGATCTTAATCACGCGGTGGAGCATGAGACACTCTCTGGGGAGCTTCAGAGCAAGTTGGATTTGAAGGGTGAGGATGAAAGTGAGGACAAAGTTTCCGACTTGAACGACGGTGGAGGAGTTTGCGACGAAGAAACTGCTAAGGGTGATGGAGATAGTAGGGGTTCGGAGACAAATAGTTGGAATGAGGAAGTGGGTGTTGATGTTGATGTTGATGCTGATGAAGATGAAGATGAAGATGATGTTGGTGTTGGTGATGATGGAGTGGAGACGAAGGAAGAGAGAAACAGTGATATGACTCACCACTATCCTTTGAGGCCTGAAGCTGAGGATTGTGCATTTTATATGAAAACTGGGAATTGCAAGTTTGGGTTTAACTGCAAGTTTAATCACCCTATTAGGAGGAAAACCCAGGCTGTTAAAGAGAAGACGGGAGAAGGAGAAGAACCCACAGACAGATCAAGCACAACAGAATGCAAGTATTATCAAAGATCTGGGGGTTGTAAGTTTGGAAAATCTTGTAAATATAACCACACAAGAGGAAAATTTTCAACAACAGCACCAGCACCAGTTTTTGAACTTAACTTTCTTGGTCTGCCTATTCGTCAGGGGGAGAGGGAGTGCCCCTATTACATGCGCACTGGCTCTTGTAAATTTGGAGCAAACTGCAAGTTCAACCATCCTGACCCTACAGCTGTTGGAGGATGTGAACCTCCTTCAGGGTTTGGTAATGGAGGGCCTATTTCATTACAGGGTGTAGCACGACCATCTGTACCCTCCTGGTCTTCTCCAAGATCATTAAATGAAGCATCTCCTTTTGTGCCAATGATGCTTTCACCTACTCAAGGAGTTTCTACCCAAAGTTCTGACTGGAATGGATACCAGGCATCTGTTTACCTACCTGAGAGGAACATGCATCCACCTTCTACATTTGTCTTGAACAACCCAGCAGTCGATACAAATGTTTACTTGCACCATCAAAAGCAGATGTCTGTGGAAGAGTTTCCAGAAAGGCCTGGTGAACCTGAATGTAGCTACTTCTTAAAAACTGGGGATTGCAAGTTTAAATCTAATTGTAAATTTCACCATCCAAAGAATCGGATTGCAAGATTACCTCCATGCAACCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAAAGTGTCTGCTCCCATTACAGTCGCTATGGAATTTGCAAATTTGGACCAGCTTGTAAGTTTGACCACCCAATAAACTTGCAGCCCTTAATGATGTCTGGACTTGGTGACCAGTCATATTCAAATTCAGCTAGTGTTGAGGTGGCTGGGATAGGTGAAAGTACAGGTGAAACTGATGCAACAATTCAGCAATCTGTGTAA 1458 0.4486 MEGSESDSAPLSISNGEDPQLGASSPPPPPPPPSDLNHAVEHETLSGELQSKLDLKGEDESEDKVSDLNDGGGVCDEETAKGDGDSRGSETNSWNEEVGVDVDVDADEDEDEDDVGVGDDGVETKEERNSDMTHHYPLRPEAEDCAFYMKTGNCKFGFNCKFNHPIRRKTQAVKEKTGEGEEPTDRSSTTECKYYQRSGGCKFGKSCKYNHTRGKFSTTAPAPVFELNFLGLPIRQGERECPYYMRTGSCKFGANCKFNHPDPTAVGGCEPPSGFGNGGPISLQGVARPSVPSWSSPRSLNEASPFVPMMLSPTQGVSTQSSDWNGYQASVYLPERNMHPPSTFVLNNPAVDTNVYLHHQKQMSVEEFPERPGEPECSYFLKTGDCKFKSNCKFHHPKNRIARLPPCNLSDKGLPLRPDQSVCSHYSRYGICKFGPACKFDHPINLQPLMMSGLGDQSYSNSASVEVAGIGESTGETDATIQQSV* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2145 485 MobiDBLite consensus disorder prediction 1 136 - -
Pvu3g2145 485 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 6 485 - -
Pvu3g2145 485 SUPERFAMILY CCCH zinc finger 415 443 IPR036855 GO:0046872
Pvu3g2145 485 SUPERFAMILY CCCH zinc finger 238 262 IPR036855 GO:0046872
Pvu3g2145 485 ProSiteProfiles Zinc finger C3H1-type profile. 235 263 IPR000571 GO:0046872
Pvu3g2145 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 165 IPR000571 GO:0046872
Pvu3g2145 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 419 443 IPR000571 GO:0046872
Pvu3g2145 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 373 398 IPR000571 GO:0046872
Pvu3g2145 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 237 261 IPR000571 GO:0046872
Pvu3g2145 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 189 211 IPR000571 GO:0046872
Pvu3g2145 485 SUPERFAMILY CCCH zinc finger 376 400 IPR036855 GO:0046872
Pvu3g2145 485 ProSiteProfiles Zinc finger C3H1-type profile. 186 214 IPR000571 GO:0046872
Pvu3g2145 485 MobiDBLite consensus disorder prediction 121 136 - -
Pvu3g2145 485 MobiDBLite consensus disorder prediction 41 85 - -
Pvu3g2145 485 SUPERFAMILY CCCH zinc finger 188 215 IPR036855 GO:0046872
Pvu3g2145 485 ProSiteProfiles Zinc finger C3H1-type profile. 371 399 IPR000571 GO:0046872
Pvu3g2145 485 Gene3D - 110 177 - -
Pvu3g2145 485 ProSiteProfiles Zinc finger C3H1-type profile. 417 445 IPR000571 GO:0046872
Pvu3g2145 485 MobiDBLite consensus disorder prediction 1 21 - -
Pvu3g2145 485 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Pvu3g2145 485 Gene3D - 180 269 - -
Pvu3g2145 485 Gene3D - 416 463 - -
Pvu3g2145 485 Gene3D - 352 412 - -
Pvu3g2145 485 MobiDBLite consensus disorder prediction 100 120 - -
Pvu3g2145 485 SUPERFAMILY CCCH zinc finger 138 167 IPR036855 GO:0046872
Pvu3g2145 485 MobiDBLite consensus disorder prediction 22 36 - -
Pvu3g2145 485 PANTHER PROTEIN PHOSPHATASE RELATED 6 485 - -
Pvu3g2145 485 SMART c3hfinal6 235 262 IPR000571 GO:0046872
Pvu3g2145 485 SMART c3hfinal6 417 444 IPR000571 GO:0046872
Pvu3g2145 485 SMART c3hfinal6 371 398 IPR000571 GO:0046872
Pvu3g2145 485 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Pvu3g2145 485 SMART c3hfinal6 186 213 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2145 Pvu-Chr3 42243339 42248077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2145 133 477 C2H2 Transcription Factor Family AT3G02830 40.164 2.00e-73 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pvu3g2145 zf-CCCH 7.9e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2145 - - gmx:100786894 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2145 3 42243339 42248077 Pvu9g1752 9 24777928 24782632 ECH
Pvu3g2145 3 42243339 42248077 Pvu3g2145 3 42243339 42248077 ECH
Pvu3g2145 3 42243339 42248077 Pvu9g1752 9 24777928 24782632 PCT