Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2143 ATGGCGGGTTCGGAGGAAGTATTGCCGTGGCTGAAATCGCTGCCGGTGGCGCCTGAGTACCGCCCAACCACGGCGGAGTTCCAAAACCCGATCGCCTACATCTCCAAAATCGAGAAAGAAGCCTCTCAATACGGAATCTGTAAGATCATTCCACCGCTTCCCCCTTCTCCCAAGAAAACCGCAACTGCCAACCTCACGCGCTCCCGGCCTACCTTTACCACGCGCCAACAGCAGATCGGCTTCTGCCCCCGCCGCGCGCAGCCGGTGCGCCGCCGCGTATGGCGCAGCGGCCATCACTACTCCCTTCGGGAATTCGAAGCCAAGGCTAAGGCCTTCCACAAAACCTACTTAAACAAAAACAAACCCAAACCTCTCGAACTCGAAACGCTCTATTGGAAAGCCACCTTAGACAAACCCTTCTCCGTCGAATATGCGAACGACATACCTGGCTCCGCGTTTAGCCCCCTCCGTGCTTCGCGCGATGCCGATTACGTTGGCGACACCGCGTGGAACATGAGGGCGGTTTCGCGGGGGAGCGACTCGCTTCTTAGGTTCATGAAAGAGGAAATTCCAGGCGTGACGTCACCCATGGTCTATGTGGCAATGTTGTTCAGCTGGTTCGCGTGGCACGTGGAGGATCACGACTTGCATAGCTTGAACTACCTCCATTTCGGCGCTCCCAAGACTTGGTACGGCGTGCCTAGGGACGCTGCGGTCGCGTTCGAGGACGTTGTCAGAATTCATGGCTACGGCGGAGAGATTAATCCTCTCGTTACTTTTGCTATTCTTGGCGAGAAAACCACGGTGATGTCTCCGGAGGTTTTTGTTGGCGCCGGTATTCCCTGCTGCAGGCTAGTTCAAAATGCTGGGGAATTTGTTGTGACGTTTCCAAGAGCGTATCACACAGGATTTAGTCATGGGTTTAACTGTGGAGAGGCAGCTAACATTGCGACGCCTGAATGGTTAAGGTTTGCTAAGGATGCTGCTATTCGCAGGGCTTCCATTAACTATCCTCCCATGGTGTCACATTTCCAGTTGCTTTATGACCTTGGCCTTGCCTTTTGTTCTAGAATCCCTGGAGGCATTAGAGCTGAACCACGAAGTTCTCGGCTTAAATATAAGAGAAACGGTGAAGGAGAAACTGTAATTAAAGAACTATTTGTACAGGACGTGGTAGAGAACAATGATCTGCTTCACACACTCAGCAAAGGGTCTGCTATAGTACTTCTTCCTCGTAGCTCTTCTGACTTTTCTGTTTGCTCAAAGTTACGCGTTGGATCACAACAACTAAAAGTGAACCCTGACTTTTCTCTCAATGTATACGATTATGAGAGAATGGATTCCCCAGATTTTATTTCTGATGACCTTATGTTCAACAGGAATCATGGAATCAAACAAGTAAAGAGTTTTTATTCCGTAAAAGAGAAGTTTGTTACGTTGTGTGAAAAGAACAGGATTTTGCCATTCAGTTCGGATGGGAACATATACCCTTCAAGTTCAAAAACACTGCAAGGAGACAGTGAAAAGGAAACAGATCAAGGAGATGGGTTGTCAGATCAGAGACTATTTTCTTGTGTCACATGTGGAATATTAAGCTTTTCCTGTGTTGCCATTGTACAACCTAGAGAACCAGCAGCTACGTACCTTATGTCAGCTGATTGTAGTTTCTTTAATGATTGGATTGTTGGTTCTGGAGTAACTAGCAATAAATTTGCAAATGCCCATGAAGATGCAAGTATTCCCAAGCCAAGAACATATACAGTGACACATCTTGTTGACAATGCAGGATGGACTAAGCAATATGCCCAACATGATTCAAATGGTGTTCCCGTTCAATCTGAGGCTTTAAATTCTGGAAGAGATAAAGGAAATACAGCTCTTGCCTTATTGGCATCAGCGTATGGGAATTCTTCTGACTCTGAGGAAGACCAGGGGCGATTAGATATTGCACTTGATGGTGATGAATTAAATGTAATAAACCATCCATCCACTAATGGATCTCAGGAGATGTCAAGTATGCCTTCTCATTTCAAAGATCCCCATGCTAGTCCCATGGTTAGAGTCATTGGACTTGATAAAGAAGATGATATTCATTCAAGACGAATGGACAATTATGAGTATTATATGCATAAAAGAGTTGAGCACATTATGACTCCTTTTGACTACTCTGTTAAGTCAGAAGATCTTGACAACACTTCAGGGGTGGCATTTAGAAATACTAGGGCTGTGCCCCATCTCTCCTTGAATCGCTCCCAAGATACTCACACTGATGAAGACTCGTCTAGAATGCATATCTTCTGTTTAGAGCATGCTGTAGAAGCAGAGCAGCAACTTCGCCCAATAGGAGGAGCACACATATTGCTCCTATGTCATCCAGATTATCCAAAGATAGAGGCTGAAGCAAAGATTGTTGCAGAGGAACTGAGGATTGGTTATACATGGAAGAATACTATATACAGGCAAGCCAACAGGGAAGATGAGGTGAGGATCCAATCAGCTCTGGATAGTGAGGAAGCTATTCCTGGAAACGGGGACTGGGCTGTAAAGCTGGGAATCAATCTCTTTTACAGTGCCAATCTTAGCCGTTCAGCACTTTACGTTAAGCAGATTCCTTACAATTCTGTTATATACAAAGCATTTGGTCAAAGCTCTCCAGCAAGCTCACCTACAGAGCCCAAGGTCTATCAGAGAAGGACCAACAAGCAGAAAAAGGTAGTTGCTGGGAAATGGTGTGGCAAAGTTTGGATGTCCAATCAAGTCCATCCCCTTTTAGCAAAAAGAGATTTCGAAGATGTTGAGAATGAAACAAGCTTACATGGGTGGCCATTGCCTGATGATGAGAAAATTGAGAGATCAGTAAGTAACCACAAAAGCAATACTTCAACTCGAAAATCTGGTAAGAAATGGAAAAAATCTGTTCAGAAAGGAGGAACCTGGGAAGAAAGTTTTTCTGAGAGAGATTGGCTTTCAGATAATTCCATTGAAGAAAAATCCAATAAATATCGAAGGAGGATTCTTGGGAGTAAGCAAACCAGGCATATTGAGAGAGATGATACTACTTCACAAGGGGATTATTCTCCTCTGCCACATCATAAAAAGCCTATAAGCAAACATTCAGAATCTAGTGGAAATGATGCAGTTTCTGATGATTCTTGTATACAGCATCGAAGGAAGGCTAACACCAATGAAGCTAAATTTGTTGGCGGTGATGTGTTTTCAGATGATACAATGGACTACGGGTCTGATCGGTTGCATAGGGGGGAGCTTAGCAATGGGCAGGATGCTATTTCAGACAATTCATTGGGTACCTGTTCTCTTCAGCTGCGCAGAAAGACTCCTAAAGGCAAGTATGATAAATACATTATAGAAGAAGACATGATTTCTGATGACCAAAGCGAGGTTTGTTTTTGGAAGCAGAGAGGGAATATATCTAAAGGCAGACAAAGATCCCTTTCTGCTAAAAATAAAGATAATCGGGAGCACCATAGGCAGAAACAGCAACAAAGGAATCTGAGAAGCAGGCAAGACAAGCACCTTGCATTCATCGGTGAGGAAGATGTAATGTCTGATGACCAGTTGAAGGATCACTTTCAGAAGCCCCAAAGAAGTACTCGAAGGAGCAGGCAAAATAAATACAATGATAAAGATCTTATGGATGACTTGGCAAAAAATAATTTTTATATGCTATATAGAACTCGTAAAAGGAAGCAAGCTAAAGATATGGATGAGGACAGTATAGATTCAGATGATCTAATAGAGGATATTTTTCATCTGCAGCACAAAAGAACTCTTCAAAGTAAGCAATCTAAATCTCAGATTCTTCAACCAAAGAAACAAACTAATCCACTCCATTTGAGAAACAAGACATCCCGTCCTGTGAAACAAGGTGCTCCTACGCTAATGAAATCAAAGGCTGCTCGGCAGGCAAAGAATCAATCTGGAAACTCAAAAGACTTAACATTACATGTGGAAGAGGAGGAAGATGGTGGCCCTCGCACACGACTTAGGAAGAGAGTCCTAGAAAAAGAGTCTGAAGGAAACTTGAAAGAAAAGAGAATCAAAAGGGAAAAGGCGAAGAATACAACAGCTGCGAAGGTTTCAGTTGGCCATGCCAAAACAAAGGATGAGGAATCAGAATATCAGTGTGACATTGAGGGTTGTACCATGAGTTTTGGGTCTAAACAGGAGCTGTTGCAACATAAGAGAAACATTTGTCCTGTGAAAGGATGCGGAAAGAATTTTTTTTCGCACAAATATCTAGTGCAGCATCGTCGAGTTCATGAGGATGACCGCCCATTGAAGTGCCCTTGGAAAGGGTGTAAGATGAGTTTCAAGTGGGCATGGGCACGCACTGAGCACATTCGAGTCCACACTGGTGCTCGTCCTTATGTGTGCGCTGAGCCAGGGTGTGGGCAAACATTTAGATTTGTTTCTGATTTCAGTCGTCATAAGCGAAAGACTGGTCATGCAACCAAGAAGAATTGTTGA 4488 0.4412 MAGSEEVLPWLKSLPVAPEYRPTTAEFQNPIAYISKIEKEASQYGICKIIPPLPPSPKKTATANLTRSRPTFTTRQQQIGFCPRRAQPVRRRVWRSGHHYSLREFEAKAKAFHKTYLNKNKPKPLELETLYWKATLDKPFSVEYANDIPGSAFSPLRASRDADYVGDTAWNMRAVSRGSDSLLRFMKEEIPGVTSPMVYVAMLFSWFAWHVEDHDLHSLNYLHFGAPKTWYGVPRDAAVAFEDVVRIHGYGGEINPLVTFAILGEKTTVMSPEVFVGAGIPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRFAKDAAIRRASINYPPMVSHFQLLYDLGLAFCSRIPGGIRAEPRSSRLKYKRNGEGETVIKELFVQDVVENNDLLHTLSKGSAIVLLPRSSSDFSVCSKLRVGSQQLKVNPDFSLNVYDYERMDSPDFISDDLMFNRNHGIKQVKSFYSVKEKFVTLCEKNRILPFSSDGNIYPSSSKTLQGDSEKETDQGDGLSDQRLFSCVTCGILSFSCVAIVQPREPAATYLMSADCSFFNDWIVGSGVTSNKFANAHEDASIPKPRTYTVTHLVDNAGWTKQYAQHDSNGVPVQSEALNSGRDKGNTALALLASAYGNSSDSEEDQGRLDIALDGDELNVINHPSTNGSQEMSSMPSHFKDPHASPMVRVIGLDKEDDIHSRRMDNYEYYMHKRVEHIMTPFDYSVKSEDLDNTSGVAFRNTRAVPHLSLNRSQDTHTDEDSSRMHIFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKIVAEELRIGYTWKNTIYRQANREDEVRIQSALDSEEAIPGNGDWAVKLGINLFYSANLSRSALYVKQIPYNSVIYKAFGQSSPASSPTEPKVYQRRTNKQKKVVAGKWCGKVWMSNQVHPLLAKRDFEDVENETSLHGWPLPDDEKIERSVSNHKSNTSTRKSGKKWKKSVQKGGTWEESFSERDWLSDNSIEEKSNKYRRRILGSKQTRHIERDDTTSQGDYSPLPHHKKPISKHSESSGNDAVSDDSCIQHRRKANTNEAKFVGGDVFSDDTMDYGSDRLHRGELSNGQDAISDNSLGTCSLQLRRKTPKGKYDKYIIEEDMISDDQSEVCFWKQRGNISKGRQRSLSAKNKDNREHHRQKQQQRNLRSRQDKHLAFIGEEDVMSDDQLKDHFQKPQRSTRRSRQNKYNDKDLMDDLAKNNFYMLYRTRKRKQAKDMDEDSIDSDDLIEDIFHLQHKRTLQSKQSKSQILQPKKQTNPLHLRNKTSRPVKQGAPTLMKSKAARQAKNQSGNSKDLTLHVEEEEDGGPRTRLRKRVLEKESEGNLKEKRIKREKAKNTTAAKVSVGHAKTKDEESEYQCDIEGCTMSFGSKQELLQHKRNICPVKGCGKNFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHATKKNC* 1496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2143 1495 SUPERFAMILY Clavaminate synthase-like 103 338 - -
Pvu3g2143 1495 SMART JmjN_1 16 57 IPR003349 -
Pvu3g2143 1495 MobiDBLite consensus disorder prediction 936 976 - -
Pvu3g2143 1495 Pfam JmjC domain, hydroxylase 197 315 IPR003347 -
Pvu3g2143 1495 Coils Coil 1341 1361 - -
Pvu3g2143 1495 SUPERFAMILY beta-beta-alpha zinc fingers 1443 1487 IPR036236 -
Pvu3g2143 1495 MobiDBLite consensus disorder prediction 1004 1051 - -
Pvu3g2143 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 1465 1489 IPR013087 -
Pvu3g2143 1495 ProSiteProfiles Zinc finger C2H2 type domain profile. 1433 1462 IPR013087 -
Pvu3g2143 1495 PANTHER LYSINE-SPECIFIC DEMETHYLASE 4 1486 - -
Pvu3g2143 1495 MobiDBLite consensus disorder prediction 1319 1348 - -
Pvu3g2143 1495 MobiDBLite consensus disorder prediction 1150 1175 - -
Pvu3g2143 1495 ProSiteProfiles JmjN domain profile. 17 58 IPR003349 -
Pvu3g2143 1495 Gene3D Classic Zinc Finger 1351 1402 - -
Pvu3g2143 1495 SMART c2h2final6 1463 1489 IPR013087 -
Pvu3g2143 1495 SMART c2h2final6 1433 1457 IPR013087 -
Pvu3g2143 1495 SMART c2h2final6 1403 1427 IPR013087 -
Pvu3g2143 1495 SMART c2h2final6 1380 1402 IPR013087 -
Pvu3g2143 1495 MobiDBLite consensus disorder prediction 936 954 - -
Pvu3g2143 1495 MobiDBLite consensus disorder prediction 1145 1175 - -
Pvu3g2143 1495 SMART cupin_9 164 333 IPR003347 -
Pvu3g2143 1495 Gene3D Classic Zinc Finger 1403 1487 - -
Pvu3g2143 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 1435 1457 IPR013087 -
Pvu3g2143 1495 Pfam jmjN domain 18 51 IPR003349 -
Pvu3g2143 1495 PANTHER LYSINE-SPECIFIC DEMETHYLASE REF6 4 1486 - -
Pvu3g2143 1495 MobiDBLite consensus disorder prediction 1265 1296 - -
Pvu3g2143 1495 ProSitePatterns Zinc finger C2H2 type domain signature. 1405 1427 IPR013087 -
Pvu3g2143 1495 Gene3D Cupin 10 337 - -
Pvu3g2143 1495 MobiDBLite consensus disorder prediction 1262 1348 - -
Pvu3g2143 1495 SUPERFAMILY beta-beta-alpha zinc fingers 1403 1439 IPR036236 -
Pvu3g2143 1495 ProSiteProfiles Zinc finger C2H2 type domain profile. 1403 1432 IPR013087 -
Pvu3g2143 1495 MobiDBLite consensus disorder prediction 1190 1217 - -
Pvu3g2143 1495 MobiDBLite consensus disorder prediction 1004 1020 - -
Pvu3g2143 1495 ProSiteProfiles JmjC domain profile. 164 333 IPR003347 -
Pvu3g2143 1495 ProSiteProfiles Zinc finger C2H2 type domain profile. 1463 1494 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2143 Pvu-Chr3 42230290 42237544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2143 1330 1493 C2H2 Transcription Factor Family AT3G48430 64.607 7.52e-68 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu3g2143 JmjC 2.3e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2143 - - gmx:100775813 1817.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2143 3 42230290 42237544 Pvu3g2143 3 42230290 42237544 ECH
Pvu3g2143 3 42230290 42237544 Pvu2g1621 2 29918258 29937715 PCT
Pvu9g1753 9 24785330 24795168 Pvu3g2143 3 42230290 42237544 PCT