Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2142 ATGGCTTCGAGTGAGGGGTTTCTGACGGACGGGCAGAGGGAAATGCTAAAAATTGCGAGTCAAAATGCGGAGATTCTGTCTTCGTCTCCAAAATCCCCGTCCTCCTTGCTATCTGACCATTATGTGAAAGCCCCAGCTGGTGGTAAGGCACAAACCGCTGGGATAGCTGTGAGGCATGTGCGTCGGTCACACTCTGCGAAGTATGGGCGGGTGAAGAAAGATGGTGCTGGTGGCAAAGGCACTTGGGGGAAATTGCTTGATACTGATATTGTTTCTCACATAGATCGAAATGATCCAAATTATGACAGTGGCGAGGAACCCTATCAACTGGTTGGATCCACTGTTACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAATATTTTAGTAATGGGGATGTGGAATTGGCAGCATCTGACCTCAAAGAACTTGGCTCAAGTGAATACTATCCATACTTCATTAAACGCCTTGTGTCCATGGCAATGGACAGGCACGATAAGGAGAAAGAAATGGCTTCTGTTCTTCTTTCTGCATTGTATGCTGATGTCATCAGCCCTGCACAGATCAGGGATGGGTTTTTTATTCTTCTTGAATCTGCCGACGATCTTGCTGTGGATATACTGGATGCAGTTGATATTCTTGCATTATTCTTGGCACGGGCTGTTGTTGATGACATTCTTCCCCCAGCCTTTCTTGCCAGGGCAATGAAGGCACTTCCAGATTCATCCAAGGGAGTTCAGGTAATCCAGACTGCTGAAAAGAGTTATCTCTCAGCTCCACACCATGCAGAGCTTGTGGAAAGGCGATGGGGTGGTAGCACTCACATAACTGTTGAAGAAGTGAAGAAGAAGATAGCTGATTTACTTAGAGAATATGTGGGTAGTGGTGACACATTGGAAGCCTGTAGGTGTATACGTGAGTTGGGGGTTTCATTCTTCCATCACGAGGTTGTTAAGAGGGCTTTGGTACTTGCCATGGAAATTCGTTCAGCAGAACCTCTAATGTTGAAATTATTAAAAGAAGCAGCAGAAGAAGGACTTGTTAGTTCCAGCCAAATGGTGAAGGGTTTTTCTCGTTTGGCAGAATCCCTAGACGATCTTGCTCTTGATATTCCCTCAGCTAAGGCACTGTTTCAGTCATTTGTCCCTAAGGCAATATCTGAAGGATGGCTTGATGCTTCACTTACCAAACCTGCAACTGAAGATGGGGAAATACAAGTTGAAGACGAGCAGGTGAAGAAGTACAAAAAGGAATCTGTAACTATAATTCATGAGTATTTTCTTTCTGATGACATTCCTGAACTGATTCGAAGTCTTGAAGAAATTGGAGCTCCTGAGTTTAACCCTATATTTTTGAAGAAGTTAATAACTCTAGCTATGGATCGAAAGAACAGAGAAAAGGAAATGGCATCTGTACTGCTATCTGCACTTCACATAGAGATATTCTCAACTGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAACTGCGGAAGATACAGCATTGGATATACTGGACGCTTCAAATGAGCTTGCTCTGTTTTTAGCTCGGGCTGTTATTGACGATGTATTGGCCCCACTGAATTTGGAAGAAATTGGCAGCAGGTTGCCACCAAAGTGTAGTGGTAGTGAAACTGTGCGTATGGCTCGGTCACTCATAGCTGCTCGTCATGCTGGGGAGAGGCTATTGAGATGTTGGGGTGGAGGCACGGGATGGGCTGTGGAGGATGCCAAGGACAAGATCATGAAGCTCTTGGAAGAGTACGAAAGTGGAGGGGTTGTCAGTGAAGCTTGCCAATGTATCCGTGACCTGGGAATGCCTTTCTTTAATCACGAGGTAGTGAAGAAAGCTTTGATTATGGCCATGGAGAAAAAGAATGATCGAATGCTAGATCTACTGCAGGAGTGCTACAGTGAGGGTCTGATCACCATTAATCAGATGACTAAAGGTTTCACCCGAATTAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAACGCAAAGGAGAAATTTAGCTTCTATGTGGAGCATGCTCAGTCGAAGGGCTGGCTTCTACCATCTTTTGACTCGCCTACTACAGATGTCTAA 2109 0.4476 MASSEGFLTDGQREMLKIASQNAEILSSSPKSPSSLLSDHYVKAPAGGKAQTAGIAVRHVRRSHSAKYGRVKKDGAGGKGTWGKLLDTDIVSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSIIEEYFSNGDVELAASDLKELGSSEYYPYFIKRLVSMAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFILLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAMKALPDSSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKIADLLREYVGSGDTLEACRCIRELGVSFFHHEVVKRALVLAMEIRSAEPLMLKLLKEAAEEGLVSSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASLTKPATEDGEIQVEDEQVKKYKKESVTIIHEYFLSDDIPELIRSLEEIGAPEFNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLETAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDRMLDLLQECYSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFSFYVEHAQSKGWLLPSFDSPTTDV* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2142 702 ProSiteProfiles MI domain profile. 285 406 IPR003891 -
Pvu3g2142 702 ProSiteProfiles MI domain profile. 582 701 IPR003891 -
Pvu3g2142 702 PANTHER PROGRAMMED CELL DEATH 4 1 694 IPR039778 GO:0045892
Pvu3g2142 702 Pfam MA3 domain 421 530 IPR003891 -
Pvu3g2142 702 Pfam MA3 domain 584 691 IPR003891 -
Pvu3g2142 702 Pfam MA3 domain 122 233 IPR003891 -
Pvu3g2142 702 Pfam MA3 domain 286 397 IPR003891 -
Pvu3g2142 702 SUPERFAMILY ARM repeat 417 575 IPR016024 -
Pvu3g2142 702 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Pvu3g2142 702 SUPERFAMILY ARM repeat 579 695 IPR016024 -
Pvu3g2142 702 PANTHER PROGRAMMED CELL DEATH PROTEIN 4-LIKE 1 694 - -
Pvu3g2142 702 SMART ma3_7 122 233 IPR003891 -
Pvu3g2142 702 SMART ma3_7 583 692 IPR003891 -
Pvu3g2142 702 SMART ma3_7 420 531 IPR003891 -
Pvu3g2142 702 SMART ma3_7 286 397 IPR003891 -
Pvu3g2142 702 SUPERFAMILY ARM repeat 282 403 IPR016024 -
Pvu3g2142 702 SUPERFAMILY ARM repeat 119 279 IPR016024 -
Pvu3g2142 702 ProSiteProfiles MI domain profile. 419 540 IPR003891 -
Pvu3g2142 702 Gene3D - 114 262 - -
Pvu3g2142 702 Gene3D - 410 563 - -
Pvu3g2142 702 Gene3D - 570 698 - -
Pvu3g2142 702 Gene3D - 272 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2142 Pvu-Chr3 42221590 42226362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2142 586 682 Eukaryotic Initiation Factors Gene Family AT5G57870 32.000 9.09e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2142 - - gmx:100784244 1285.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2142 3 42221590 42226362 Pvu3g2142 3 42221590 42226362 ECH