Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2141 ATGGATGGGAGGAGACATTCTGTGGATATTCCTATTTCCAAAACTCTTGTGGCACTGAGGAGAGTAAGGTCGTTGAGGGATCCATCAACTAATGGTGTTAGCACACTCTCTCCTTTGATTGATAATGGAGATTGGGATAATGGTTCTAGTAATGGGGTTTCCCTGAGTTTGAGATTTCTGAAAGCTTCTCATACTGATGATTTTGACGGTAATGGTTTTTCAAGATCAAACAGTTTAGACTTTAAGGGTCAGAGAGAGCAGGAAACTGCTGAGTTAGAATTGAAAATGTCGAACTCTAAGAAGAACTATTGTGGGATTTCACGTCAGCAAGGGCACCGAAATGAGGAACTTGTGTACTCTAATCCTATGAAACAAGGTATTTCTGGAGATAAATCGCCAAATGAAAGCTGTTGTAGTAACCGTGAAGGTGGAGGATTGGATTTGGTTGCCATCACGCCTCCATGTAATCATTTGACGGATGGGGAGTTATGCCGTTTATCAACTGCATTGAGAGCAGATCACTCAAAGTCAGCTAGAAAATTAGTACTCAAGAATCAAATGAAGCCATCTGGAGTGGTGGGTGACATGGCAAGCCATGTAGGAAGTCAACAGTGCCTTTCTGTTTATGATTCTATCTCAGCTCATTGTGCCTTGGAACATGTCACTCAAGATGTTGACGCTTTAGAAAATCACCATGGATGTGGATTAAGGAGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTGAAACAGAAGGCCTTCCCTTGATATTGCATCACGCTAATGAAACGGACCTCAATGGACATAGAAACGTAAGACACATTGGTGGTGAAATTAGTCAAACCATGGAAACTCCTAGAAGTTTATCTGTGAAATTCAGGCCAAAATCTTTTGATGATTTGGTTGGACAAAATGTGATAGGTAAGTCTCTTTTGGGTGCTATCTGTAGAGGAAGGATTGCATCATTTTATCTCTTCCATGGTCCACGCGGCACGGGCAAGACCACAGCCTCTAGGATATTTGCTGCTGCACTGAACTGCCTATCCTCTGTGGAGCAAAAGCCTTGTGGTCTGTGTAGAGAATGCGTTTTGTTCTTCTCTGGAAGAAATAAAAATGTTAATGAAGTAGATTCTTTGAGAATCAATCGTGCAGAGAAAGTTAAATCCCTTGTTAAGCATGCATGCATTCCTCCAGTTTCCTCAAGTTTTAAAGTGGTCATTGTTGATGAGTGCCAGTTATTGCACGGGGAAACATGGGCGTGCCTTTTGAATAGTCTAGAGAACGTTTCTCCTCATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACCTTCCTCGGAGTGCAGTTTCCCGGGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGCTGACATTGTAAGAAGATTGGAAAAAATTTCTGTCGAAGAAGGTCTTGAATCTGAACAAGTTGCTTTGGACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCAGAAACTATGCTTGATCAACTGAGTTTGCTTGGTAAAAGGATCACAATTTCCTTAGTCCACGAGCTTACTGGGGTAATTTCTGATGATGAATTGCTTGATTTGCTGGACCTAGCTTTATCATCTGACACTTCAAATACAGTTATAAGAGCCCGGGAACTTGTCAGAACAAGGATAGATCCTTTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTGTCAGGGAAATGTGAACTTCGTGGTTCTGAAATAAAAACAGGATTTTATAATAGATATACCTCGGAAGCTGACCTGCAGAGACTAAGTCATGCATTAAGAATACTGTCTGAATCAGAGAAGCAGTTAAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTACAGTTGAGCTCCGTAGAATATTCATCTGCAGATACAAATACTACGAAGTTGTGTACACGAGCTGCATCCATTAGAGATGGTGATATCTGCAGTACATCTCCTAAAGGGGACAGCTTGGAGCATCTTGCTACAACAGATCAATGTGGTGATAATTCATATAGGTTAGGAGTGCAGGAGGATCACAAAAGAACATTGGATTCTATATGGTATAAAGCAACTGAGATGTGTCAATCTAGAAGGCTCAGAACATTTCTCAGGAAACAGGGGAAGTTGTCTTCAGTTTGTATTGGTCAAGGCCGTGCAGTTGCCGAGTTGGAGTTCCGGCATCGTGACTATGTAAGTAGGGCTGAGAAGTCATGGAAGTTGATTGCAAGTTCTCTGCAATTCATATTAGGCTGTAACCTTGAGCTCAGAATCCATTATGTTCCTTCTTGTACTTCAGATTCTATGTATGCTAAATTGAAGAGGTCATCCTTCAATTTCTTTGGTTGTTCCCGTAGAATTCGTTGGAAATCTTTATCATATAATGAACAAGGAAGTGAATCAGACTATGCTGAATACACCTCTCAAAAGCCCATGATGAAGGATCAAACTCTAACTTGTTCCTCTGATTGTGAACCCCTGGTGCCACCATTTGAGTCCTGCCATGGAATTGGAATGCAGGTCATAACAACTTTGAGAAGTAGCGAAGGAAATGTGCTAAGCTCAGGGAAAATGTTTATGAATAGGCCAGATGGAGAGACTCCAAGAATTTCTTGTTCGAGAGTTGATTCTTGCATGGAAGAGGGATGCAATTATGAACACTTAGCTTCATCAACCCTTGATTTAGATAATCAGTCCGACTGTTTTCCTGGAACCCGCTGGCTTCATAAAAAGTTTGGTTCTTCTTATGCACCACACCAGAAGGATTTTGTTTTATCTATCCCCAAGTTAAAATGTTCTGAGATTTGTAGATATGATCTTGAACCCTGTGTCTTTTCTCACCGTTCTAAGAACTGCACTCAAGCTTCCGAGGAGAATTGCTAG 2934 0.4093 MDGRRHSVDIPISKTLVALRRVRSLRDPSTNGVSTLSPLIDNGDWDNGSSNGVSLSLRFLKASHTDDFDGNGFSRSNSLDFKGQREQETAELELKMSNSKKNYCGISRQQGHRNEELVYSNPMKQGISGDKSPNESCCSNREGGGLDLVAITPPCNHLTDGELCRLSTALRADHSKSARKLVLKNQMKPSGVVGDMASHVGSQQCLSVYDSISAHCALEHVTQDVDALENHHGCGLRSCWSKSPRFRESNHYSETEGLPLILHHANETDLNGHRNVRHIGGEISQTMETPRSLSVKFRPKSFDDLVGQNVIGKSLLGAICRGRIASFYLFHGPRGTGKTTASRIFAAALNCLSSVEQKPCGLCRECVLFFSGRNKNVNEVDSLRINRAEKVKSLVKHACIPPVSSSFKVVIVDECQLLHGETWACLLNSLENVSPHVVFVMITPDLDNLPRSAVSRAQRYHFAKIKDADIVRRLEKISVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKRITISLVHELTGVISDDELLDLLDLALSSDTSNTVIRARELVRTRIDPLQLISQLANLIMDILSGKCELRGSEIKTGFYNRYTSEADLQRLSHALRILSESEKQLRISKNQTTWFTAALLQLSSVEYSSADTNTTKLCTRAASIRDGDICSTSPKGDSLEHLATTDQCGDNSYRLGVQEDHKRTLDSIWYKATEMCQSRRLRTFLRKQGKLSSVCIGQGRAVAELEFRHRDYVSRAEKSWKLIASSLQFILGCNLELRIHYVPSCTSDSMYAKLKRSSFNFFGCSRRIRWKSLSYNEQGSESDYAEYTSQKPMMKDQTLTCSSDCEPLVPPFESCHGIGMQVITTLRSSEGNVLSSGKMFMNRPDGETPRISCSRVDSCMEEGCNYEHLASSTLDLDNQSDCFPGTRWLHKKFGSSYAPHQKDFVLSIPKLKCSEICRYDLEPCVFSHRSKNCTQASEENC* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2141 977 SMART AAA_5 324 484 IPR003593 -
Pvu3g2141 977 Pfam DNA polymerase III, delta subunit 309 465 - -
Pvu3g2141 977 Gene3D - 466 528 - -
Pvu3g2141 977 CDD HLD_clamp_pol_III_gamma_tau 465 528 IPR045085 -
Pvu3g2141 977 PANTHER DNA POLYMERASE III SUBUNIT GAMMA/TAU 116 950 - -
Pvu3g2141 977 Gene3D - 283 463 IPR027417 -
Pvu3g2141 977 SUPERFAMILY post-AAA+ oligomerization domain-like 535 636 IPR008921 GO:0003677|GO:0006260
Pvu3g2141 977 CDD AAA 306 456 - -
Pvu3g2141 977 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 292 638 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Pvu3g2141 977 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 116 950 - -
Pvu3g2141 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 515 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2141 Pvu-Chr3 42212335 42217831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2141 296 590 Core DNA Replication Machinery Family AT1G21690 24.252 2.70e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2141 - - pvu:PHAVU_003G207500g 1952.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2141 3 42212335 42217831 Pvu3g2141 3 42212335 42217831 ECH
Pvu3g2141 3 42212335 42217831 Pvu9g1760 9 24877107 24881984 PCT