Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2140 ATGGCCACCACTTTCCCCTCTCTCCTCCTCTTCCTCTTCTCTCTCCTCACCCCCTCACTCGTTTCTTCTTCCCCTGTCCAGAACCCTCAATTGGTCGCCCAAGAAGTTAACAGGAAAATCAATGCCTCTGTGGCTAGGAGGAATTTGGGTTACCTGTCCTGTGGGACAGGGAACCCCATTGATGACTGTTGGAGGTGTGACCCGAACTGGGAGAAGAACAGGCAAAGGCTAGCGGATTGTGCAATTGGGTTTGGGAAAAACGCGATTGGAGGAAAGAACGGCAAAATCTACGTGGTGACGGATTCCAGCGACGATGACGCGGTGACGCCCAAGCCGGGGACGCTCCGTTACGCGGTGATTCAGGAGGAGCCTCTTTGGATCATATTCGCGAGGGACATGGTGATTAAGCTGAAGGAGGAGCTGATCATGAACTCGTTCAAGACCATTGATGGAAGAGGCGCTAGCGTGCACATTGCGAATGGTCCATGCATTACGATACAGTATGTGACGAATGTTATAATCCACGGGATAAATATTCATGACTGTAAGCAAGGGGGGAACGCTATGGTGCGGGACTCCCCACGCCACTACGGGTGGAGGACCGTATCCGACGGTGATGGCGTCTCCATCTTCGGAGGAAGCCACGTTTGGGTTGACCATTGCTCCTTGTCTAACTGCAATGACGGGTTGATCGATGCCATTCATGGTTCTACCGCCATTACCATCTCCAACAATTACATGACTCACCATGATAAAGTCATGCTTTTGGGTCACAGCGACTCCTACACTCAAGACAAGAACATGCAGGTCACAATTGCTTTCAACCACTTTGGAGAAGGCCTCGTTCAAAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTACACCCACTGGGAAATGTATGCCATTGGAGGAAGTGCTGAGCCAACCATCAATAGTCAAGGCAATAGGTTTGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCACGAGGATGCTCCAGAGAGTGAATGGAAAGGGTGGAATTGGAGGTCTGAAGGGGACCTACTGGTAAATGGTGCGTTTTTCACAGCATCAGGGGCAGGAGCCTCCTCTAGCTATGCAAGAGCTTCTAGCCTCAGTGCGAGGCCATCTTCACTGGTAGGCTCCATCACGACTAATGCGGGTGCACTGACCTGCAGAAAGGGTTCCCGCTGCTGA 1221 0.5127 MATTFPSLLLFLFSLLTPSLVSSSPVQNPQLVAQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSSDDDAVTPKPGTLRYAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIANGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRFVAPDDRFSKEVTKHEDAPESEWKGWNWRSEGDLLVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTNAGALTCRKGSRC* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2140 406 PANTHER PECTATE LYASE 7 403 - -
Pvu3g2140 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Pvu3g2140 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Pvu3g2140 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Pvu3g2140 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Pvu3g2140 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Pvu3g2140 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Pvu3g2140 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Pvu3g2140 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Pvu3g2140 406 SMART amb_all 132 329 IPR002022 -
Pvu3g2140 406 Pfam Pectate lyase 138 323 IPR002022 -
Pvu3g2140 406 Gene3D - 57 399 IPR012334 -
Pvu3g2140 406 PANTHER PECTATE LYASE 18-RELATED 7 403 IPR045032 GO:0030570
Pvu3g2140 406 SUPERFAMILY Pectin lyase-like 36 401 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2140 Pvu-Chr3 42186228 42188285 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2140 9 406 Polysaccharide Lyase AT5G63180 80.250 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2140 K01728 - gmx:100779940 744.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2140 3 42186228 42188285 Pvu9g1761 9 24925196 24927951 ECH
Pvu1g2652 1 51315890 51318232 Pvu3g2140 3 42186228 42188285 ECH
Pvu9g1761 9 24925196 24927951 Pvu3g2140 3 42186228 42188285 ECH
Pvu3g2140 3 42186228 42188285 Pvu3g2140 3 42186228 42188285 ECH
Pvu3g2140 3 42186228 42188285 Pvu9g1761 9 24925196 24927951 PCT