Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2139 ATGGCTCCCAAAACAACCGTATCCACCAACTACCAAACCACCCGGGTCTTACCCGAACCCGATGTCTTCATACACTGTTCCCAAGGAACACGCATTCCAGCCCACGCTGCCGTTCTGGCTTCGGTGTCGCCGGTTTTGGAGAACTTCATCGATCGGCCACGTAAGCATCGGAGTTCGGAGAAAATAATCCAAATCCAGGGCGTCCCTTGCGACGCCGTCATCGCCTTCGTCGGATTCCTCTACTCCTCCAGGTGCACGGAGGAGGCGATGGACAAGTACGGGATGCACCTGCTCGCATTGTCGCACGTCTACCTGGTGCCGCAGCTGAAACAGAGATGCATCAAGGGTTTGACCCAGCGCTTGACCACAGAGAACGTGGTGGACGTGCTGCAACTCGCGCGCCTCTGCGACGCACCGGATCTCCACCTCCGCTGCATGAAGCTCCTCACCTATAACTTCAAAGCGGTGGAGGCAACGGAGGGGTGGAAGTTCCTCGTCAAACACGATCCCTGGCTCGAACTCGACATTCTCAGCTTCATCGACGAACACGAAACGAGGAAGAAGAAATCGAGGAGGTATAGGATGGAGCAGGGTCTGTACGGGGAACTGAGCGAGGCGATGGAGTGTCTGGAACACATATGCGCGGAGGGGTGCACGCACGTTGGACCCCATGATGCGGAGGTGAAGAAAGAGAGGAGGCCCTGTGGCAAATTCTCCACGTGTGAAGGGCTTCAGGTTCTGATCCGCCACTTTGCCACGTGCGAGAAGAAGATGGGCGGTGGCTGCGTCCGCTGCAAACGGATGTGGCAACTCTTTCGACTTCATTCCTACGTTTGTCACCAAACAGATCTCTCCTGCAAGGTTCCTTTCTGCAGGCAATTTCAATTGAAAATGCAGCAAGAGAAAAGAAAGGACGATGCTAAATGGAAACTTCTAGCGAGGAAGGTGACCTCAGCCAAAGTCCTGTCTTCCCTGTCTCTTCCAAAGAGGAAGCGAGATGAGGAGATCGGAGGCACAATAAACAATCCCGGGATTAGAAGCTTTAAATTACTATGA 1056 0.5407 MAPKTTVSTNYQTTRVLPEPDVFIHCSQGTRIPAHAAVLASVSPVLENFIDRPRKHRSSEKIIQIQGVPCDAVIAFVGFLYSSRCTEEAMDKYGMHLLALSHVYLVPQLKQRCIKGLTQRLTTENVVDVLQLARLCDAPDLHLRCMKLLTYNFKAVEATEGWKFLVKHDPWLELDILSFIDEHETRKKKSRRYRMEQGLYGELSEAMECLEHICAEGCTHVGPHDAEVKKERRPCGKFSTCEGLQVLIRHFATCEKKMGGGCVRCKRMWQLFRLHSYVCHQTDLSCKVPFCRQFQLKMQQEKRKDDAKWKLLARKVTSAKVLSSLSLPKRKRDEEIGGTINNPGIRSFKLL* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2139 351 PANTHER BTB/POZ AND TAZ DOMAIN PROTEIN 2 349 - -
Pvu3g2139 351 Gene3D TAZ domain 196 320 IPR035898 -
Pvu3g2139 351 Pfam BTB/POZ domain 20 120 IPR000210 GO:0005515
Pvu3g2139 351 Gene3D - 122 195 - -
Pvu3g2139 351 Gene3D Potassium Channel Kv1.1; Chain A 18 121 IPR011333 -
Pvu3g2139 351 ProSiteProfiles BTB domain profile. 20 89 IPR000210 GO:0005515
Pvu3g2139 351 CDD BACK 122 169 - -
Pvu3g2139 351 SUPERFAMILY POZ domain 21 149 IPR011333 -
Pvu3g2139 351 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 2 349 IPR044513 -
Pvu3g2139 351 SMART BTB_4 20 121 IPR000210 GO:0005515
Pvu3g2139 351 SUPERFAMILY TAZ domain 196 300 IPR035898 -
Pvu3g2139 351 Pfam TAZ zinc finger 204 291 IPR000197 -
Pvu3g2139 351 SMART TAZ_2 197 292 IPR000197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2139 Pvu-Chr3 42156613 42160390 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Pvu3g2139 BTB 3.8e-13 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2139 - - gmx:100807120 617.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2139 3 42156613 42160390 Pvu3g2139 3 42156613 42160390 ECH
Pvu3g2139 3 42156613 42160390 Pvu9g1762 9 24939116 24941904 PCT