Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2133 ATGTCTATGCCTTTTTCTCTCACAACCACGCCTTCCTTCAACACTCTCACAATGGCGGAATCCTGCATTCTCTCTCTCCCTTCTCTCTTCCGCGCCAATACCAAAACCCTTTCTCTCTCAATTCCCTCTAAGCGCCTCAACCTCCAGCTTCCATCTTCCAATTCTTCCCTCTTTCCCCTCACCACCAACACCACCCGCTTCCCCTCTCTCCTCACATTCGTCGCCCAGACATCGGATTGGGCCAAAGAAGAGGGAGAAAACGCCGTATGGGAGAACGAAGACGACAAAGCGTGGGGAACTGAAGAAGGAGGCGATGACGGCGTGGAAGAAATTACGGGAGGGGGTTTTGCTCAACCACCTGAGGAAGTTAAGATCTTTGTTGGGAACTTGCCTTATGATGTTGATAGCGAGCAATTGGCTTCGCTTTTTAAGCCGGCTGGCACCGTTGAGGTTGCTGAGGTCATTTATAATAGGGTTACTGACCGGAGTCGTGGCTTTGGATTTGTCACCATGAGTACGCTTGAAGAGGTTGAGAAGGCTGTCGAGAAGTTCAGTGGTTATGAACTAAATGGAAGAGTGTTGACTGTTAATAAGGCCGCTCCAAAAGGGGCACAGCCTGACCGCTCATCCCGCCCACCACCTCGAACCTTTAAATCTACTACAATCTACGTTGGGAACTTGCCATGGGATGCTGACAAAGCTCGGCTGGAGCAAATTTTTAGTGAACATGGTAAGGTTGAGGAGGCTCGGGTGGTCTATGACAGAGACAGTGGTCGATCACGTGGTTTTGGCTTTGTCACAATGTTCAGTGAGGCTGATGTGAATGATGCAATTGCTGCTCTTGATGGTCAGGAGTTGGATGGGAGAACAATCAGAGTGAATATTGCAGAGGAAAAGCCTAGACGCAGCTCCTTTTGA 918 0.4956 MSMPFSLTTTPSFNTLTMAESCILSLPSLFRANTKTLSLSIPSKRLNLQLPSSNSSLFPLTTNTTRFPSLLTFVAQTSDWAKEEGENAVWENEDDKAWGTEEGGDDGVEEITGGGFAQPPEEVKIFVGNLPYDVDSEQLASLFKPAGTVEVAEVIYNRVTDRSRGFGFVTMSTLEEVEKAVEKFSGYELNGRVLTVNKAAPKGAQPDRSSRPPPRTFKSTTIYVGNLPWDADKARLEQIFSEHGKVEEARVVYDRDSGRSRGFGFVTMFSEADVNDAIAALDGQELDGRTIRVNIAEEKPRRSSF* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2133 305 Gene3D - 207 305 IPR012677 -
Pvu3g2133 305 MobiDBLite consensus disorder prediction 198 217 - -
Pvu3g2133 305 CDD RRM_HP0827_like 221 297 - -
Pvu3g2133 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 125 194 IPR000504 GO:0003723
Pvu3g2133 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 222 292 IPR000504 GO:0003723
Pvu3g2133 305 SUPERFAMILY RNA-binding domain, RBD 212 303 IPR035979 GO:0003676
Pvu3g2133 305 PANTHER OS02G0815200 PROTEIN 8 96 - -
Pvu3g2133 305 PANTHER OS02G0815200 PROTEIN 112 305 - -
Pvu3g2133 305 SMART rrm1_1 221 294 IPR000504 GO:0003723
Pvu3g2133 305 SMART rrm1_1 124 197 IPR000504 GO:0003723
Pvu3g2133 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Pvu3g2133 305 PANTHER RIBONUCLEOPROTEIN 112 305 - -
Pvu3g2133 305 PANTHER RIBONUCLEOPROTEIN 8 96 - -
Pvu3g2133 305 SUPERFAMILY RNA-binding domain, RBD 119 212 IPR035979 GO:0003676
Pvu3g2133 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 201 IPR000504 GO:0003723
Pvu3g2133 305 CDD RRM_HP0827_like 124 201 - -
Pvu3g2133 305 Gene3D - 75 206 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2133 Pvu-Chr3 42106366 42108946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2133 125 302 Eukaryotic Initiation Factors Gene Family AT3G16380 33.152 6.66e-21 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2133 - - gmx:100804984 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2133 3 42106366 42108946 Pvu9g1771 9 25016188 25018700 ECH
Pvu3g2133 3 42106366 42108946 Pvu3g2133 3 42106366 42108946 ECH
Pvu3g2133 3 42106366 42108946 Pvu9g1771 9 25016188 25018700 PCT