Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2108 ATGAACCCTTACGAGAATAGATACTCTGATTCCGCTTCTTTTCATGGTCGTCGCAGTGATTTCGTTAGATCTATTCCTCCGCCGTCTTTTGGCGGTCGCGGCGATGCGGTTCCCTACGGCGCCTTTAGACCCAACGGGTTCGGATCCGCACCCCTTGCTCCGATTCCATCATTTGTGCCCCCTCCTGGGGGGTTTAGCGTAGGACGAGGTAGTGCTAGAGTGGGCAATGGTCACATGAGTGATAGAAAATACGACATAGGTCGTAGCGGCGGTGGAAGAGGTCGTGGTGGTGGTAGAGGCGGGGCTCAAGGTTTTAGGGGCTCCAGGAGAGGAGGTAGACACGATGGTGGTTCTTCTAGGGACGATTTGAACAACATTACACTTCCGAAGCAGAGTTTTAGGAATTTGGTCCCTTTTGAGAAGAATTTTTACGTTGAGTGCCCTGCGGTGAGAGCCATGACTGAGCAAGAAGTTACGCATTACCGTGCTTGTAGAGAGATCACCGTGCAAGGGCATGATGTGCCGAAACCTGTACGGATGTTTCACGAGGCGAATTTTCCTGATTATTGCCTTGAGGTCATTGCCAATCTGGGTTTTGCTGAGCCCACTCCAATTCAGGCTCAGGGTTGGCCTATGGCAATGAAGGGTAGAGATTTAATTGGCATTGCTGAGACTGGCTCGGGTAAAACTTTGGCGTATTTGCTTCCTGCTTTAGTGCACGTCAATGCTCAACCTCGACTGTCACATGGTGATGGTCCCATTGTCTTAGTATTAGCACCGACAAGAGAGCTTGCTATTCAAATTCAAGAAGAGGCTCTGAAATTTGGGTCACGAACAAATTGTAGAAGTACGTGCATCTATGGTGGTGCACCAAAGGGCCCCCAAATTCGTGAGCTAAGAAGAGGCGTTGAGATTGTTATTGCTACACCTGGTCGTCTAATAGATATGTTGGAAGCTCAGCACACAAACCTTCAAAGAGTGACTTACCTTGTCTTGGATGAAGCTGATCGAATGCTGGACATGGGTTTTGAACCTCAGATACGGAAAATTGTAGGCCAGATTCGACCAGATAGACAAACATTATTATGGAGTGCTACATGGCCAAGGGAGGTTGAGACTCTGTCAAGGCAGTTTCTCCGCAATCCATACAAGGTAATTGTTGGGTCACCAAACCTGAAGGCAAATCAATCTATAAATCAAGTTGTTGAAGTTGTAACAGACATGGAGAAATATAATAGATTAATCAGACTGCTGAAAGAAGTGATGGACGGGAGCCGAGTTCTAATATTTATGGAGACTAAAAAGGGATGTGATCAAGTTACGAGACAAATGAGAATGGATGGGTGGCCAGCACTATCCATCCATGGTGATAAAAACCAGGCTGAGAGGGATTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATTAAATGTGTGATCAATTATGATTTTCCATCAAGCCTGGAAGATTATGTACACAGAATTGGTCGAACTGGTCGTGCAGGGGCCAAAGGAACTGCGTACACATTTTTTACACACGGCAATGCCAAGTTTGCTAGGGATCTGATCAAGATTTTACAAGATGCTGGTCAGGTTGTGAGTCCTGCATTGTCTGCATTGGTTCGGTCAGCTGGTTCTGGTCAATTTGGATCAGGGGGAAGTTTTCGCACAAGAGGACGCGGAGGCTATGGAAATCGAGGTTTAACATCAGGTTCCAATGCCATTCCTCTAGGTTCGAAGAGGCCTTGGCAGTATCTATAG 1812 0.4696 MNPYENRYSDSASFHGRRSDFVRSIPPPSFGGRGDAVPYGAFRPNGFGSAPLAPIPSFVPPPGGFSVGRGSARVGNGHMSDRKYDIGRSGGGRGRGGGRGGAQGFRGSRRGGRHDGGSSRDDLNNITLPKQSFRNLVPFEKNFYVECPAVRAMTEQEVTHYRACREITVQGHDVPKPVRMFHEANFPDYCLEVIANLGFAEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALVHVNAQPRLSHGDGPIVLVLAPTRELAIQIQEEALKFGSRTNCRSTCIYGGAPKGPQIRELRRGVEIVIATPGRLIDMLEAQHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLLWSATWPREVETLSRQFLRNPYKVIVGSPNLKANQSINQVVEVVTDMEKYNRLIRLLKEVMDGSRVLIFMETKKGCDQVTRQMRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTHGNAKFARDLIKILQDAGQVVSPALSALVRSAGSGQFGSGGSFRTRGRGGYGNRGLTSGSNAIPLGSKRPWQYL* 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2108 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 413 558 IPR001650 -
Pvu3g2108 603 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 331 339 IPR000629 -
Pvu3g2108 603 Pfam Helicase conserved C-terminal domain 409 519 IPR001650 -
Pvu3g2108 603 CDD DEADc_DDX5_DDX17 191 385 - -
Pvu3g2108 603 Gene3D - 388 561 IPR027417 -
Pvu3g2108 603 MobiDBLite consensus disorder prediction 564 592 - -
Pvu3g2108 603 CDD SF2_C_DEAD 398 528 - -
Pvu3g2108 603 Gene3D - 152 387 IPR027417 -
Pvu3g2108 603 SMART helicmild6 438 519 IPR001650 -
Pvu3g2108 603 MobiDBLite consensus disorder prediction 69 126 - -
Pvu3g2108 603 Pfam DEAD/DEAH box helicase 203 374 IPR011545 GO:0003676|GO:0005524
Pvu3g2108 603 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 179 207 IPR014014 GO:0003724
Pvu3g2108 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 385 IPR014001 -
Pvu3g2108 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 251 539 IPR027417 -
Pvu3g2108 603 PANTHER LD32873P 88 588 - -
Pvu3g2108 603 SMART ultradead3 198 401 IPR014001 -
Pvu3g2108 603 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 88 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2108 Pvu-Chr3 41877329 41884620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2108 176 539 Eukaryotic Initiation Factors Gene Family AT3G19760 35.342 3.79e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2108 K12823 - gmx:100817092 1006.13