Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2106 ATGGCACCACCTCCGCAGAAGGCGCCGCCTCCTCCTTCGGTTGTTGCCGCCGCCAACCACTCTCAATCTTCCCCACACGCCCTTCCTCTTAAAGGAATTACTACAACAGCTGGGTTCCAATCAAGCCACCCTCTGGATCCTTTATCGGCTGCCGAAATCTCTGTGGCAGTGGCAACTGTGAGGGAAGCAGGAGTAACTCCTGAGCTCAGAGACAATATGCGGTTTATTGAAGTAGTTTTGTTGGAACCAGATAAACATGTTGTTGCACTGGCAGATGCCTATTTCTTTCCTCCATTCCAACCATCATTACTTCCTAGAACTAAAGAAGGGACAGTAATTTCAAGTAAACTTCCTCCAAGACGCGCAAGACTTGTTGTTTACAATAAGAAGACAAATGAAACTAGTATATGGATTGTTGAATTATCACACGTACATACAGTAACTCGAGGAGGTCATCACCGAGGAAAACTAATTTCATCACAGGTTGTTCCAGATGTTCAGCCTCCCATGGATGCTATGGAGTATGCAGAGTGTGAAGCTGTCGTTAAGGACTATCCTCCATTTAGAGAGGCTATTAAGATAAGGGGCATTGAAGACATGGACCTCGTAATGGTTGATGCCTGGTGTGTTGGTTATTACAGTGAAGCTGATGGTCCCAATCGTAGACTTTCTAAGCCACTTATATTTTGTCGGTCCGAAAGCGACTGCCCTATGGAAAATGGCTACGCACGCCCAGTTGAGGGCATCTATGTGCTTGTTGATATGCAAAATAGGGCGGTGATTGAATTTGAAGACCGTGAATTTGTTCCTCTGCCTCCGGTTGATCCCTTGAGGAACTATACACATGGTGAAACAAGAGGTGGATCTGATAGAAGTGATATAAAACCCTTGCAAATTGTTCAGCTCGAAGGTCCAAGCTTTCGAGTCGATGGCTTTTATGTTGCATGGCAGAAGTGGAACTTTCGTATTGGATTCACACCTAGAGAAGGTTTGGTTATATATTCGGTTGCATATGTTGATGGTAGTCAAGGGCGAAGGCCTGTAGCTCATAGACTGAGTTTTGTGGAGATGGTTGTACCCTATGGGGATCCAAATGAACAACACTATAGGAAGAATGCTTTTGATGCTGGGGAAAATGGCTTGGGGAAAAATGCACATTCTCTCAAGAAGGGGTGTGATCGTTTGAGCTACATCAAATATTTCGATGCTCATTTCACAAATTTCATTGGTGGAGTTGAGACAATTGAAAATTGTGTATGTTTGCACGAAGAGGATCATGGAATTCTGTGGAAACATCAAGACTGGAGAACAGGCTTAGCAGAAGTCCGAAGGTCTAGAAGACTTTCAGTTTCTTTTATGTGCACCGTGGCTAACTATGAGTATGGATTTTTCTGGTACTTTTATCAGGCAATTAAGGTAACTGGAATTCTAAGTTTAGGAACCTTGTTACCTGGAGAATTTCGTAAATATGGAACCATGATTGCGCCAGGTCTATATGCTCCAGTTCATCAACACTTTTTTGTAGCTCGCATGGATATGGCTGTGGATTCTAAACCTGGTGATGCTTTGAATCAGGTTGTGGAGATCAATGTCAAAGTTGAGGAACCGGGGGAGAATAATGTTCACAATAACGCATTTTATGCTGAAGAGACTCTGCTCAGATCAGAATTGGAAGCCATGCGTGATTGCAATCCTTTGACTGCTCGACATTGGATTGTAAGGAACACGAGAAGAGGCAATAGAAGTGGTGAGTTGACAGGCTATAAGCTAGTACCTGGTTCAAACTGCTTACCATTAGCAGGTTCTGAGGCCATGTTCTTAAGAAGAGCTGGTTTTTTGAGGCATAATCTTTGGATAACACCCTATTCACACCATCAAATGTTTCCTGGAGGAGAATTTCCTAATCAGAATCCACGTCTCAACCAAGGACTACCAACATGGGTTAAGCAAAACCGATCTTTGGAAGAAACTGCTATAGTTCTTTGGTATGTATTTGGAATGACACACATCCCTCGTTTGGAAGATTGGCCAGTTATGCCAGTAGAACGCATAGGTTTTATGCTCATGCCTCATGGATTCTTCAACTGTTCTCCTGCAGTGGATGAAAAGAGCCTAGAGGAGCTGTTGGGTCCTATCTTGCTGGGAGAGCGCGTCATAAAACTGGCTCAGGAGGCGGAGTCTTCAAAGGTGGACTGCACGGAGCTGGCGCGGAAGGTGCAGGTGGTGTGCGACAACCTGCGCTCCGTCGTGCGTGTGGTGTCGGGGACGCAGTGCGTGAACGAGCGCCCCATACGTCGCATCGTCGGCGAGGTCTCCAAAAACCTAGAGCGCACGTTAGCGTTCGTGCGCAAGTGCAAGAAACACGGCGCCGTCCTCCGCCAGGTCTTCTCCATGACCACCACCGCCGACTTCCGGAAGGTCTGGAACCTTCTAGAATCTTCCAACGGCGACATGGTGTGGCTCCTCAGCATCTTGGACTCCAAGGATGGCTCCAATGTCTCCCTTCCCCCCATCGCCAGCAACGACCCCATCCTTGCATGGGTCTGGACCTTCATCTACACTCTTCAATTGGGTCAGCCCAAGGACCGCGCTGAAGCGGCCACTGAACTTGGCTCCCTCGCCAAAGATAATGACCGTACAAAATTCATCATCTTGGAGGAAGGTGGAGTGCCCCCCCTCCTCAAGCTTCTCAAGGAAGCTTCTTCCCCTGATGCTCAGGTTGCTGCTGCCAATGCTCTTGTCAACGTTACTACTAATCAAGACAGGGTCGTTAGTTACGTCGTAGAGTCCCATGCTGCCCCTACTATTGTTCAGGTCCTTGGTGATTCCCCTATGAGGGTTCGTGTCTCTGTTGCCAATTTGGTCTCAGCTATGGCTGAGCAACATGAACTTGCTCGCGAGGAGTTGGTGAGGGCCAATGTGACTAGGCCCCTCGTGTCGTTGTTGTCCATGGATACTGTCCTTGCAGACCCCATGGCCGGTCGTGCTAGTATCCATTCGCTTGTTCTGAATTTGTCCAACGTTGGGGAGACAAACTCGGATGGGAGTAGCCGTGGCTCCAGCCACCATCGGAGGGAGAGGGAAAGGGAAAGAGAGGTTGAGAGCCTGGAGCTGAGGAAGGAGGTCAAAATCAGTTGTGCTAAGGCTCTTTGGAAACTCTCCAAAGGGTGCTTTTCAAGTTGCAAGAAGATTACCGAGACTAAAGGTTTGCTTTGTCTTGCTAAGATTATTGAGTCTGAGAGTGGGGAATTGCAGCTTAATTGTCTTATGGCTGTCATGGAGATTGCTGCTGTGGCAGAGTCCAATGCTGATCTTAGAAGAGCTGCTTTTAAGCGAACTGCGCCTGCGGCAAAGGCGGTAATTGATCAGCTTTTGAGGGTGGTTCAGGAAGAGAGTAATCCGGCACTGGTGATTCCTGCCATTAAGGCAATTGGTTCCTTGGCCAGGAACTTTTCTGGAAAGGTTCCGCAAGTTCTTGGTCCTTTAGTTGCTCAGCTTGGTAACAGAGATGTTGATGTAGCCAGTGAGGCTGCCATTGCATTGGGAAAATTTGTCAGCCCGGACAACTACAATTGTGTTGACCATTCTAAGGCAATACTTGAGCTTGAAGGGGTTCCGAAGCTAATGAGCCTGCTGCAGATAAATGATCGCCAACAAGTTCATGGCCTGAGATTACTTTGTTACCTTGCCTTAAATGTAGGTAACAGTAAGGTCCTTGAGCAAGAACGTGCCTTGAATACCTTAGAGAGGTTTTCTCGTCCTGTTCAAACACAATATCCTGATTTGAAGGACCTTTTTGCAAATGCTATACACCACCTCACTCTTTATCAGCCAGGAGCTCAATTGCACAGACAGCCCTTGGGGCTGTAA 3870 0.4721 MAPPPQKAPPPPSVVAAANHSQSSPHALPLKGITTTAGFQSSHPLDPLSAAEISVAVATVREAGVTPELRDNMRFIEVVLLEPDKHVVALADAYFFPPFQPSLLPRTKEGTVISSKLPPRRARLVVYNKKTNETSIWIVELSHVHTVTRGGHHRGKLISSQVVPDVQPPMDAMEYAECEAVVKDYPPFREAIKIRGIEDMDLVMVDAWCVGYYSEADGPNRRLSKPLIFCRSESDCPMENGYARPVEGIYVLVDMQNRAVIEFEDREFVPLPPVDPLRNYTHGETRGGSDRSDIKPLQIVQLEGPSFRVDGFYVAWQKWNFRIGFTPREGLVIYSVAYVDGSQGRRPVAHRLSFVEMVVPYGDPNEQHYRKNAFDAGENGLGKNAHSLKKGCDRLSYIKYFDAHFTNFIGGVETIENCVCLHEEDHGILWKHQDWRTGLAEVRRSRRLSVSFMCTVANYEYGFFWYFYQAIKVTGILSLGTLLPGEFRKYGTMIAPGLYAPVHQHFFVARMDMAVDSKPGDALNQVVEINVKVEEPGENNVHNNAFYAEETLLRSELEAMRDCNPLTARHWIVRNTRRGNRSGELTGYKLVPGSNCLPLAGSEAMFLRRAGFLRHNLWITPYSHHQMFPGGEFPNQNPRLNQGLPTWVKQNRSLEETAIVLWYVFGMTHIPRLEDWPVMPVERIGFMLMPHGFFNCSPAVDEKSLEELLGPILLGERVIKLAQEAESSKVDCTELARKVQVVCDNLRSVVRVVSGTQCVNERPIRRIVGEVSKNLERTLAFVRKCKKHGAVLRQVFSMTTTADFRKVWNLLESSNGDMVWLLSILDSKDGSNVSLPPIASNDPILAWVWTFIYTLQLGQPKDRAEAATELGSLAKDNDRTKFIILEEGGVPPLLKLLKEASSPDAQVAAANALVNVTTNQDRVVSYVVESHAAPTIVQVLGDSPMRVRVSVANLVSAMAEQHELAREELVRANVTRPLVSLLSMDTVLADPMAGRASIHSLVLNLSNVGETNSDGSSRGSSHHRREREREREVESLELRKEVKISCAKALWKLSKGCFSSCKKITETKGLLCLAKIIESESGELQLNCLMAVMEIAAVAESNADLRRAAFKRTAPAAKAVIDQLLRVVQEESNPALVIPAIKAIGSLARNFSGKVPQVLGPLVAQLGNRDVDVASEAAIALGKFVSPDNYNCVDHSKAILELEGVPKLMSLLQINDRQQVHGLRLLCYLALNVGNSKVLEQERALNTLERFSRPVQTQYPDLKDLFANAIHHLTLYQPGAQLHRQPLGL* 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2106 1289 Pfam Copper amine oxidase, N2 domain 43 132 IPR015800 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Pvu3g2106 1289 Gene3D Copper amine oxidase, catalytic domain 284 702 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Pvu3g2106 1289 SUPERFAMILY ARM repeat 858 1271 IPR016024 -
Pvu3g2106 1289 SUPERFAMILY Amine oxidase catalytic domain 291 701 IPR036460 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Pvu3g2106 1289 Gene3D - 31 170 - -
Pvu3g2106 1289 Gene3D - 1028 1284 IPR011989 -
Pvu3g2106 1289 Gene3D - 850 1018 IPR011989 -
Pvu3g2106 1289 Pfam Copper amine oxidase, enzyme domain 297 699 IPR015798 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Pvu3g2106 1289 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 888 921 IPR000225 GO:0005515
Pvu3g2106 1289 SMART arm_5 919 960 IPR000225 GO:0005515
Pvu3g2106 1289 SMART arm_5 962 1055 IPR000225 GO:0005515
Pvu3g2106 1289 SMART arm_5 876 918 IPR000225 GO:0005515
Pvu3g2106 1289 SMART arm_5 1192 1231 IPR000225 GO:0005515
Pvu3g2106 1289 Gene3D - 703 823 IPR036537 GO:0007166
Pvu3g2106 1289 Gene3D - 173 275 - -
Pvu3g2106 1289 MobiDBLite consensus disorder prediction 1017 1032 - -
Pvu3g2106 1289 PANTHER AMINE OXIDASE 31 701 - -
Pvu3g2106 1289 SUPERFAMILY Amine oxidase N-terminal region 41 168 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Pvu3g2106 1289 MobiDBLite consensus disorder prediction 1011 1032 - -
Pvu3g2106 1289 PANTHER COPPER AMINE OXIDASE 31 701 IPR000269 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Pvu3g2106 1289 Pfam Copper amine oxidase, N3 domain 168 271 IPR015802 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Pvu3g2106 1289 SUPERFAMILY Amine oxidase N-terminal region 167 284 IPR016182 GO:0005507|GO:0008131|GO:0009308|GO:0048038
Pvu3g2106 1289 MobiDBLite consensus disorder prediction 1 29 - -
Pvu3g2106 1289 Pfam Armadillo/beta-catenin-like repeat 881 917 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2106 Pvu-Chr3 41853814 41866530 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2106 851 983 U-box Gene Family AT2G28830 30.827 4.63e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2106 K00276 - gmx:100817454 1276.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2106 3 41853814 41866530 Pvu3g2106 3 41853814 41866530 ECH
Pvu3g2106 3 41853814 41866530 Pvu9g1805 9 25387068 25394742 PCT