Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2105 ATGGGTCGGCATTCCTGTTGTGTAAAGCAAAAATTGAGGAAAGGTTTATGGTCCCCTGAGGAAGATGAGAAGCTGTTCAACTACATAACCAGATTTGGAGTTGGATGCTGGAGTTCGGTTCCGAAACTAGCTGGATTGCAAAGATGTGGAAAGAGTTGCAGGTTGAGATGGATAAACTATTTGAGGCCTGATTTAAAGAGAGGGATGTTCTCACAGCAGGAGGAGGATCTTATTATCAGTCTCCATGAAGTTCTTGGAAACAGGTGGGCTCAAATAGCAGCACAGTTACCAGGGAGAACAGATAATGAGATTAAAAACTTTTGGAATTCATGTCTAAAAAAGAAGCTTCTGAAGCAAGGGATTGACCCAAATACACACAAGCCCTTAACAGAAGCTCATGTCAAGGAAGAAAAGAAAATCACAGACACAACACCTATGCAAACACCACTGTCTCACGGCCTTCCGGTTCCATTGACTTTCCCTTCATCACAGGGATCAACACTTCTAATAGATTCCAATTACTATGATGGAGGACTAACTGAAGCTTCAAGAGAAATTTTCTTGAACAAGCCAGCATTGGACCCTTTATCCTACTATGATTTTCCAATGGGTGCTGCGCAGTCTGGTTTTAACTTACCTATGACCCAGTATCAGACAAGCCTTAAAGCATCTGATCAGAGTCCTTTTGGACCCAATTCAAGCTACGGATTCCTTTCAATGCCAAGTCTAACCAATTCTGATCATGGGAACGTGTCGGTGACTGAGTTTTCAGACAACAATTCAGCTTCCAAAATCAGTTCATTGCTCATGAATGACCAGGTGAAAGAAAGTTCCAGCAATAGCTCAAACATGAGCAACATTTACACTGGAGGAGGGTGTCATATAAGCAGCATGATGGAAAATGCAGGTTTCTCGTGGGAGGGTGACAACAAATTTGATCCTTTGTTTCAGTTCCAAGTAAATGCCACAAAATCCGAGGATTTCAAGACGAGTCCATGGGAAGAGGGGCAGCTGCAGACTCACAGTTCGATAGATTATACTAGCTTTCCATTAACAGCACTTTCAGAAGATCTAACTGGAGAAAATTTTGATGTATTTCAGCATATATGA 1110 0.4189 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPNTHKPLTEAHVKEEKKITDTTPMQTPLSHGLPVPLTFPSSQGSTLLIDSNYYDGGLTEASREIFLNKPALDPLSYYDFPMGAAQSGFNLPMTQYQTSLKASDQSPFGPNSSYGFLSMPSLTNSDHGNVSVTEFSDNNSASKISSLLMNDQVKESSSNSSNMSNIYTGGGCHISSMMENAGFSWEGDNKFDPLFQFQVNATKSEDFKTSPWEEGQLQTHSSIDYTSFPLTALSEDLTGENFDVFQHI* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2105 369 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pvu3g2105 369 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pvu3g2105 369 Gene3D - 11 67 - -
Pvu3g2105 369 CDD SANT 70 109 IPR001005 -
Pvu3g2105 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pvu3g2105 369 CDD SANT 17 61 IPR001005 -
Pvu3g2105 369 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pvu3g2105 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pvu3g2105 369 SMART sant 13 63 IPR001005 -
Pvu3g2105 369 SMART sant 66 114 IPR001005 -
Pvu3g2105 369 Gene3D - 69 144 - -
Pvu3g2105 369 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pvu3g2105 369 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pvu3g2105 369 PANTHER MYB TRANSCRIPTION FACTOR 1 364 - -
Pvu3g2105 369 PANTHER MYB DOMAIN PROTEIN 55 1 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2105 Pvu-Chr3 41843469 41845136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2105 1 156 MYB Transcription Factor Family AT1G57560 73.077 4.41e-81 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu3g2105 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2105 K09422 - gmx:100811140 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2105 3 41843469 41845136 Pvu9g1806 9 25423507 25425216 PCT