Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2102 ATGGCATCATCCAGCTCTTACAATTCTCCATGTGCTGCCTGCAAATTCTTGAGGAGGAAATGCATGCCAGGATGCATCTTTGCGCCTTACTTCCCACCCGAAGAGCCTCAAAAATTTGCAAACGTCCACAAAATATTTGGTGCAAGCAATGTGACCAAACTCCTCAACGAACTCCTCCCTCAGCAGAGGGAGGATGCAGTGAACTCACTCGCATATGAAGCAGAGGCACGCGTGAGGGACCCAGTTTATGGCTGCGTAGGAGCCATCTCTTTCCTGCAAAGACAAGTTCAAAGGCTCCAAAAGGAGCTTGATGCTGCAAACGCTGATCTGCTACGCTACTCTTACACTGACATCCCTCCAGCATCTCTTTCTGTGCCACCAGGACTTGCTTCATTTCAACACATACCCCAAAGGCAGTTTACTGCAAGATTTGGTAACGAAACTGGGTTTTATCGGCAATCTGCTACTGCTGCTTATTCCTTCCCTTATGCAGTTCCTTGGACTGATACCTCTTCGGAGGACATCAGTGAGGGAGGAGGGGGAGGAGGTCATTTGTGA 558 0.4892 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPQQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSYTDIPPASLSVPPGLASFQHIPQRQFTARFGNETGFYRQSATAAYSFPYAVPWTDTSSEDISEGGGGGGHL* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2102 185 Coils Coil 89 109 - -
Pvu3g2102 185 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Pvu3g2102 185 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Pvu3g2102 185 PANTHER ELONGATED PETIOLULE 1 1 182 - -
Pvu3g2102 185 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2102 Pvu-Chr3 41772866 41775107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2102 2 116 AS2 family AT5G63090 90.435 1.86e-74 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pvu3g2102 LOB 3.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2102 - - gmx:100775922 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2102 3 41772866 41775107 Pvu9g1809 9 25537328 25539743 ECH
Pvu3g2102 3 41772866 41775107 Pvu3g2102 3 41772866 41775107 ECH
Pvu3g2102 3 41772866 41775107 Pvu9g1809 9 25537328 25539743 PCT