Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2062 ATGGCTATCAGAGGCGTTGATTTCAAGTGGTACGATGGCTTTTTTTTGGCCATGCTCGCCACCAGTGTAGTTATTGTCGCAATTAATTGGAAGCGGTATCATTCTTGTACCTATCCGTTGCACATATGGATTGTGGTCGACTACACTACTGTGTTTGTTTTCCGGCTCTTGATGTTTGTTGATAACGGGCTTGCTGCGGGAATGGGATTAGATTTTGGGCGGCAGCAGAGGTATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGTGTTGCTTCTCTATCCATTTCTGTGGGCTTGGACTGTAATTGGTACCCTGTGGTTCAGCAGTGCAAAGAACTGTTTGCCTGAAGATGGTCAAAAATGGGGCTTTCTCATCTGGCTACTTTTTAGTTACTGTGGACTCCTTTGCATTGCTTGCATGTCTTTGGGAAAGTGGTTGACACGAAGACAAGCACATCTACTGCGTGCTCAACAGGGTATCCCTGTATCTGAATATGGGGTTCTGGTTGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAAGAAACAAGGGGCATGGTACAAGATGCTGCGGCATATCATCCAGGACTTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCTACTGATTGCAGTGAATGTCCTATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTTCGAGGCTTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTAGGCTGAATGTGAAATGTCCTCGGTGCCGTTGCTCAGTATTCCCAAACCTTGATCTTAGTGCACTGTCCAATCTCCCTGCTGAGCCTGAGCGATCTTCTGCAAGTGTAGTGACAACAACCAGTTATGTGAGAGGCCAACCGTCTAGTCAAAGTTACCGGTTAAGATTGCAGGGTCTTCTGCGTCCAGTCCGTGCTGAAATTGCTGGCCCTGTTGGTGACATAGATAATGCATTGCCAAATGCTGAGAACGGTTTTGTATCAATCGTGACTCACAATGCATCATCTGGAGACCACGTCTCTTCTGTCGAATGCGTGCCTGTCACCGTGAGACTTTCCTCTGCACAAAGTTAG 1149 0.4648 MAIRGVDFKWYDGFFLAMLATSVVIVAINWKRYHSCTYPLHIWIVVDYTTVFVFRLLMFVDNGLAAGMGLDFGRQQRYARFCGRVVVLSILVLLLYPFLWAWTVIGTLWFSSAKNCLPEDGQKWGFLIWLLFSYCGLLCIACMSLGKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMVQDAAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLPAEPERSSASVVTTTSYVRGQPSSQSYRLRLQGLLRPVRAEIAGPVGDIDNALPNAENGFVSIVTHNASSGDHVSSVECVPVTVRLSSAQS* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2062 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 IPR044793 GO:0004842|GO:0010182
Pvu3g2062 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Pvu3g2062 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 361 - -
Pvu3g2062 382 Pfam Ring finger domain 234 276 IPR001841 -
Pvu3g2062 382 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Pvu3g2062 382 CDD RING-H2_RNF111_like 234 278 - -
Pvu3g2062 382 SMART ring_2 235 275 IPR001841 -
Pvu3g2062 382 SUPERFAMILY RING/U-box 217 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2062 Pvu-Chr3 41287193 41294054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2062 58 360 C3H Transcription Factor Family AT3G47990 73.856 1.01e-159 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2062 K16284 - gmx:100812016 738.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2062 3 41287193 41294054 Pvu3g2062 3 41287193 41294054 ECH
Pvu3g2062 3 41287193 41294054 Pvu9g1852 9 26344869 26351297 PCT