Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2060 ATGAAGAACACAAACACTACCATTACTGCTTCATCAAAACTTGATCGCAAAACTATTGAAAGAAACCGCAGAATCCACATGAAAGGTCTCTGCTTCAAGCTTGTTTCCATTATTCCTTCCAAGGACCTCAAACCCACCAAGGACATGCTTTCCCAGCAGGACCAGCTTGATCTTGCAGCCACGTATATAAAGCATCTGAGAGAAAGATTAGAGAAACTGAAGGGGGAGAAGGAGAAAGCCATGAACATGATGAGAACAACCCAAACCAATAACGGGATTTTCAATATTGAGTCTCAGTTGCCTCTACTTGAGATAAAGGAGTTGGGTTCGGGCATCGAAGTGATGTTGATAAGTGGGGTGAATAAGAACTTCATGCTCTATGAAGTAATTAGTGTCCTTGAGGAAGAGGGTGTTGAAGTTGTCACTGCCAACTTCACTACTGTTGCTAATAAGATATTTTACACAGTTCATGCTAAGGTTAAAATATCAAGAGTTGGCGTTGAGTCAACAAGGATATATCAAAGGCTTCAGGAATTGATTCAACCACTAGAAGCTGGTAGTACATATCGTGATCGAAAGCAAAATTATTAA 591 0.4027 MKNTNTTITASSKLDRKTIERNRRIHMKGLCFKLVSIIPSKDLKPTKDMLSQQDQLDLAATYIKHLRERLEKLKGEKEKAMNMMRTTQTNNGIFNIESQLPLLEIKELGSGIEVMLISGVNKNFMLYEVISVLEEEGVEVVTANFTTVANKIFYTVHAKVKISRVGVESTRIYQRLQELIQPLEAGSTYRDRKQNY* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2060 196 PANTHER TRANSCRIPTION FACTOR BHLH162 10 181 - -
Pvu3g2060 196 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 4 78 IPR036638 GO:0046983
Pvu3g2060 196 Pfam Helix-loop-helix DNA-binding domain 16 67 IPR011598 GO:0046983
Pvu3g2060 196 Gene3D - 3 93 IPR036638 GO:0046983
Pvu3g2060 196 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 66 IPR011598 GO:0046983
Pvu3g2060 196 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 10 181 IPR015660 GO:0003700|GO:0006357
Pvu3g2060 196 Coils Coil 56 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2060 Pvu-Chr3 41256378 41257472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2060 1 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 32.642 1.13e-26 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu3g2060 HLH 2.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2060 - - vun:114179389 315.849
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2060 3 41256378 41257472 Pvu9g1854 9 26388869 26390326 ECH
Pvu3g2060 3 41256378 41257472 Pvu3g2060 3 41256378 41257472 ECH
Pvu3g2060 3 41256378 41257472 Pvu9g1854 9 26388869 26390326 PCT