Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2057 ATGACTCAAAGGGATCGCCGCATCCTATCATTCCCGGCGGTTCACCCATGCGACGACATATCTCCGCCCACACTTCTCGCCTCTCTCATAACTCTTTCTCAGTCCGTATGCAATTTTCAACCTCAGTTATTCCCTACACAACGTCGCAACGCTCGAGAAACGATACGCCAAATCGGCATACTCTTAGTTCTCCTTCAAGAAATTCGAGACCGGGGTTTATCAATCCCTCACTCCACCATCCTCTGCCTCGCAGAACTCCACTTCGCCTTGCAGAAGATCCACTTCTTGATTCAAGATTGCACACAACAAGGTGCGCGCCTTTTAATGCTTGCCAAATCGCAACACGTAGCATCCCAGTTCCGCGGCCTCATTCGCGCCGTCGCCACCTCCCTCGACGTTTTGCCTCTTCAAGACTTCGACGTGTGCGCCGAAGTGAGGGAATTGGCGGAGTTAGTAACGAGGCAAGCGCGGAAAGCCAAGTTCGAAGTGGACCCCGGCGACGCGCGTGCGTGTAAAACTCTCCATGCTGTTCTTCGTCTGTTCGCGAGGGGAACCGAACCTGAACTCAGCTCCATGCAGGGAATCATGGACTACCTCCAAATTAGAACCTGGAACGATTGCAATAAAGATATTAATTTCCTAGAAGAAGAAATCAGCTTAGAGTGTCGCGATCGTGAGGAGCGAGAGGTTCCGTTGCTCAGCAGCTTGGTAGGCTTCTTGAGTTACTGCAGAGGTGTCATTTTCGAAACTATGGAAGACACCAATCAATCCGAAGGGAGGTGCAGCACGGATATGACTCCGTTAACGTTAGCATTACTGACGTCCGTTAATCCAGAAGATTTCCGCTGCCCGATTTCCCTCGAGTTGATGACGGATCCAGTGACGGTCTCAACGGGTCAAACCTACGACCGAGTCTCCATTAAGAAATGGCTAAAAGCTGGGAACACCACCTGTCCCAAAACAGGGGAGAAGCTGACGAACATAGAATTAGTTCCCAACACATCTCTCAAAAGACTCATCCAACAGTTCTGTATCGACAATGGAATCTCACTTAACAGTCCATCTAACCGTAACCACAACATCACCGCAGGTAGTCCGACAGCAGCACACGCCATGCAATTTTTAGCGTGGTTCCTAACAAAGAGGCTGGTGTTTGGAACGCAAGAAGAGAAACAAAAAGCCGCTTACGAGATTCGTGTGCTTGCTAGAACCAGCATTTTCAATAGAACTTGTTTGATTGAAGTGGGAACAGTGCCTCCTCTATTAGAACTTTTATCCTCTGCATCTAAGGATAAATCCACTCAAGAGAATGCAATCTCAGCTCTATTGAAGCTCTCTAAGCATCCGAATGGACAAAATAATATCATAAGCAGTGGGGGCCTAACCGTAATTCTCTCCGTGTTGAAGAACGGAGTTAGCCTAGAAGTTCGTCAAGTAGCTGCTGCCATCATGTTTTATCTCTCTTCGGTGAAAGAGCACCGGAAAATAATAGGTGAGAACCCCGAGGTGATTCCGGCTTTGGTAGAGCTAGTTAAGGAAGGAACAACCTGCGGGAGAAAGAACGCTGTGGTTGCGATTTTCGGGTTGCTCTTGTTTCCTAGGAATCACCAAAGGGTGATCGCTGCAGGTGCGGTTCCTGCGCTACTACACATTTTGGCTTCTTCGGATAAGGAGGAGCTTGTGGTTGAATCATTGGCGGTTCTTGCATCGCTGGCTGAGAATGCTGACGGGGCGCGTGCGATATTTGAAGGTTCGGCGTTGGCGTTGATTAGGGGAATGCTGCGTTCTGTGACGTCACGCGTGGGGAAAGAGCACTCTGCTTCGATTTTGTTGTCACTTTGCGTCAATGTTGGGGCGGAGGTGGTGGCGGTTCTGGCGAAGGACCCTTCGGTGATGCCATCGCTTTATTCGCTTGTGACGGGTGGGAGTTGTCAGGGCTCAAAGAAAGCGCGGTTCCTGATTAAAGTTATACAGGACTTCCACGAGACCAGAACTTCTGGACTCAAAGGTTCCTCTCCTCCGCAGGAACGATCGCTTCACGTTTGGTGA 2049 0.4963 MTQRDRRILSFPAVHPCDDISPPTLLASLITLSQSVCNFQPQLFPTQRRNARETIRQIGILLVLLQEIRDRGLSIPHSTILCLAELHFALQKIHFLIQDCTQQGARLLMLAKSQHVASQFRGLIRAVATSLDVLPLQDFDVCAEVRELAELVTRQARKAKFEVDPGDARACKTLHAVLRLFARGTEPELSSMQGIMDYLQIRTWNDCNKDINFLEEEISLECRDREEREVPLLSSLVGFLSYCRGVIFETMEDTNQSEGRCSTDMTPLTLALLTSVNPEDFRCPISLELMTDPVTVSTGQTYDRVSIKKWLKAGNTTCPKTGEKLTNIELVPNTSLKRLIQQFCIDNGISLNSPSNRNHNITAGSPTAAHAMQFLAWFLTKRLVFGTQEEKQKAAYEIRVLARTSIFNRTCLIEVGTVPPLLELLSSASKDKSTQENAISALLKLSKHPNGQNNIISSGGLTVILSVLKNGVSLEVRQVAAAIMFYLSSVKEHRKIIGENPEVIPALVELVKEGTTCGRKNAVVAIFGLLLFPRNHQRVIAAGAVPALLHILASSDKEELVVESLAVLASLAENADGARAIFEGSALALIRGMLRSVTSRVGKEHSASILLSLCVNVGAEVVAVLAKDPSVMPSLYSLVTGGSCQGSKKARFLIKVIQDFHETRTSGLKGSSPPQERSLHVW* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2057 682 PANTHER OS07G0532750 PROTEIN 3 667 - -
Pvu3g2057 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 351 IPR013083 -
Pvu3g2057 682 SMART arm_5 448 489 IPR000225 GO:0005515
Pvu3g2057 682 SMART arm_5 532 573 IPR000225 GO:0005515
Pvu3g2057 682 SMART arm_5 404 447 IPR000225 GO:0005515
Pvu3g2057 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 460 IPR000225 GO:0005515
Pvu3g2057 682 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 543 586 IPR000225 GO:0005515
Pvu3g2057 682 SUPERFAMILY ARM repeat 380 657 IPR016024 -
Pvu3g2057 682 SUPERFAMILY RING/U-box 278 350 - -
Pvu3g2057 682 Pfam U-box domain 278 346 IPR003613 GO:0004842|GO:0016567
Pvu3g2057 682 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Pvu3g2057 682 PANTHER U BOX DOMAIN-CONTAINING 3 667 - -
Pvu3g2057 682 Pfam Armadillo/beta-catenin-like repeat 408 446 IPR000225 GO:0005515
Pvu3g2057 682 Gene3D - 356 660 IPR011989 -
Pvu3g2057 682 CDD RING-Ubox_PUB 281 323 IPR045210 -
Pvu3g2057 682 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2057 Pvu-Chr3 41218427 41220918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2057 2 682 U-box Gene Family AT1G60190 40.576 1.57e-170 502
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2057 - - gmx:100787869 1050.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2057 3 41218427 41220918 Pvu3g2057 3 41218427 41220918 ECH