Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2049 ATGCGCAACATTCAGATTGAAACGAAGCAAAATGGTGGTGTGAAGTACTCAGATGAGTCATATCCTCAATCTCCTTTCTCAGCATACCAAGCTCCTAATGACGGCAACACTACCAACGAGAAAGAAACAACAACGCCATCGTCTCTCAGCAGAATCAGTCCACTTATTTTGCTGGTCATAATTGTTCTAGCAGTTATCTTCTTCGTGTATGGACTTGTCCATTTGGTTCTATGGTTTTTCATGAAAACACCAACCTCTTCATCAATCTACAACTCCAACAGGTTCCACGAATCCACGCGCTCACGTGTTCTTCAGAGGCAGCTTCAACAACTCTTCCGCTTGCACGACTCAGGTCTAGACCAAGCCCTCATAGACTCTCTACCCGTTTTCCGTTACCAAGATTTATTGGGTTCAAAGGAACCGTTTGATTGTGCCGTGTGTTTATGCGAGTTCTCCGAGGACGACAAGCTGAGGTTGCTTCCTATGTGCACACACGCGTTTCACATGAACTGTCTTGACACGTGGCTTCTCTCGAATTCCACGTGTCCTCTTTGCAGGGCGTCTCTCTCCAACTACGTGGAGAATCAGAATCAGAATCAGAATCCAATGCTGTTTAATGTTGGCATTGGCAATTCAAATTGTTTGGTTCTGCCAAGTGGGTTCAGTGGTGAGGAAGAGAAGGGGTTTTCAGAGAGTGAAAGATCAGTTGGGAAAAGGGTGTTTTCCGTGAGGCTTGGAAAATTCAGAAACAATGGGTTGGAGTTAGAGAGTGGAGATAGTTGTAGTTTGAATGAGAGGAGATGCTACTCCATGGGTTCATATCGGTATGTGGTTCGTGATTCGAATCTGCAAGTGGTGTTGTCTGAATCTGGTGATGTTTCAGAAAATGAGAATGTGAAGGGAAAGAGGATAAGCGACTCAACCAAAGGTGAGAGCTTCTCTGTTTCCAAGATATGGCTTTGGTCCAAGAACTCCACATTTCATGCTTCTAATGCAGCAGCTTTCCCCTAA 1011 0.4481 MRNIQIETKQNGGVKYSDESYPQSPFSAYQAPNDGNTTNEKETTTPSSLSRISPLILLVIIVLAVIFFVYGLVHLVLWFFMKTPTSSSIYNSNRFHESTRSRVLQRQLQQLFRLHDSGLDQALIDSLPVFRYQDLLGSKEPFDCAVCLCEFSEDDKLRLLPMCTHAFHMNCLDTWLLSNSTCPLCRASLSNYVENQNQNQNPMLFNVGIGNSNCLVLPSGFSGEEEKGFSESERSVGKRVFSVRLGKFRNNGLELESGDSCSLNERRCYSMGSYRYVVRDSNLQVVLSESGDVSENENVKGKRISDSTKGESFSVSKIWLWSKNSTFHASNAAAFP* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2049 336 SMART ring_2 144 185 IPR001841 -
Pvu3g2049 336 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 10 333 - -
Pvu3g2049 336 MobiDBLite consensus disorder prediction 1 46 - -
Pvu3g2049 336 Pfam Ring finger domain 143 186 IPR001841 -
Pvu3g2049 336 SUPERFAMILY RING/U-box 123 199 - -
Pvu3g2049 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 196 IPR013083 -
Pvu3g2049 336 CDD RING-H2_PA-TM-RING 143 186 - -
Pvu3g2049 336 ProSiteProfiles Zinc finger RING-type profile. 144 186 IPR001841 -
Pvu3g2049 336 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 10 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2049 Pvu-Chr3 41143005 41144414 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2049 41 332 C3H Transcription Factor Family AT2G18650 40.525 5.36e-51 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2049 - - gmx:100807741 462.611
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2049 3 41143005 41144414 Pvu3g2049 3 41143005 41144414 ECH
Pvu3g2049 3 41143005 41144414 Pvu8g1580 8 33326836 33329392 ECH