Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2041 ATGGCATCATTTGCAGGCACTACACAGAAGTGCACAGCTTGTGAAAAGAAAGTGTATTGGGTGGAACAGCTAACTGCTGACAACAAGTTGTACCACAAATCTTGCTTTAGATGTCACCACTGCAAGGGCACCCTCAAGCTAGGTAATTATTGTTCCTTTGAGGGTGTCCTATACTGTAAGCCCCATTTTGATCAACTGTTTAAGATGACTGGCAGCTTGGAAAAAAGTTTTGAAGGTATTCCAAGAATTGCTAGAGTTGAAAGATCTGCTGATCAGGTCCAAACCAACAACAAGATTTCAAGGTTGTTTTCTGGAACTCAGGAAAAGTGTGTTGTTTGCAAGAAAACAGTGTACCCTATTGAAAAGGTGGCTGTTGATGGGAAATCTTACCACAAGTCTTGTTTCAGATGCACCCATGGAGGTTGTGTGATCAGTCCATCAAATTATGTTGCCCATGAACATCGTCTTTATTGCAGACACCACCATACTCAGCTGTTTAAGCAAAAGGGAAACTTCAGTCAATTAGTCAAGCATGAAAATCTCCAACTCACTACTCAAAACACTACACAATTACATCCAAGTAATGGCAGTGCAAGTCCAGTTCATGACTCTTAG 615 0.4114 MASFAGTTQKCTACEKKVYWVEQLTADNKLYHKSCFRCHHCKGTLKLGNYCSFEGVLYCKPHFDQLFKMTGSLEKSFEGIPRIARVERSADQVQTNNKISRLFSGTQEKCVVCKKTVYPIEKVAVDGKSYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLVKHENLQLTTQNTTQLHPSNGSASPVHDS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2041 204 SMART lim_4 10 62 IPR001781 -
Pvu3g2041 204 SMART lim_4 109 161 IPR001781 -
Pvu3g2041 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 135 - -
Pvu3g2041 204 Gene3D Cysteine Rich Protein 104 174 - -
Pvu3g2041 204 Gene3D Cysteine Rich Protein 5 75 - -
Pvu3g2041 204 PANTHER OS06G0237300 PROTEIN 1 196 IPR045268 GO:0051015
Pvu3g2041 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 136 175 - -
Pvu3g2041 204 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 196 - -
Pvu3g2041 204 Pfam LIM domain 110 165 IPR001781 -
Pvu3g2041 204 Pfam LIM domain 11 65 IPR001781 -
Pvu3g2041 204 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Pvu3g2041 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Pvu3g2041 204 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Pvu3g2041 204 CDD LIM2_SF3 110 170 - -
Pvu3g2041 204 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Pvu3g2041 204 ProSiteProfiles LIM domain profile. 108 168 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2041 Pvu-Chr3 41030989 41034056 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Pvu3g2041 LIM 1.5e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2041 K09377 - gmx:100792627 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2041 3 41030989 41034056 Pvu3g2041 3 41030989 41034056 ECH
Pvu3g2041 3 41030989 41034056 Pvu9g1873 9 26696676 26700497 PCT