Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu3g2030 ATGGCTTCTTCAGATCCCATCTCTTCCAAACACTACACTTACAACAGAAAACAGAAGTCACTGGGACTTTTGTGCACCAATTTCTTGAGTCTCTATAACCGAGACGCAGTGCACTTAATTGGCCTTGATGACGCTGCCACTCGATTAGGAGTCGAGAGAAGACGGATCTACGACATTGTTAACGTTCTCGAGAGTATTGGGGTTCTCTCAAGGAAAGCGAAAAATCAGTATACCTGGAAAGGTTTTGCTGCAATTCCTCTCACTCTTCGGGAGCTCAAAGAAGATGGTCAGAGGGAGAACTCCAATTCCTTGCGCGGGTCCACTAACGACGACATGGATAAAGTGTCCGATGATGAAGATGATGAAGAAACACAATCCAACGCCGCTACTGGAAGTCAAAATGACAAATTGAACCCTAAATCTACTCAACCCAGATCACTAAAAAATGAAAATCGAAGGGAAAAGTCTTTGGCTCTGCTGACCCAGAATTTTGTCAAGCTCTTTGTGTGCTCTAATGTTGAATTGATCTCCCTTGACGAGGCTGCAAAATTGTTGCTTGGAGATGCTCACAATACTTCAATAATGAGAACAAAAGTTAGACGCCTATATGACATCGCAAATGTGCTATCCTCCATGAACCTTATCGAGAAGACCCATACGTCAGATACAAGAAAACCAGCATTCAGGTGGCTGGGTCCTGAAGGGAAGACATGGAATGAGTCACTTCACAAATCAAATCAGAACGACTCTAGGAAAAGGGCGTTTGGAAGTGATATTACAAACATCAGTTTTGAGAGGAGTAAGGTGGAATTATTCACAAACGGAGACTTAAATTCGAATCCTAAGAAACTAAAAATTGAAAACGATATAGAGCCGGGTCAGGCAGATGAAAACAATTTAAAACAAGACACAAAACAAACTTCGAAGAGCTATCAGTTTGGTCCTTTCGCTCCAGCGTGCGTGCCCAGAGTTGGAGCCTCTGGGAAACATAATGGGAAGCAGGTGCATGACTGGGACGGTCTAGTGAATGCACACAGCCCACAGTATCAAAACGAAGCTTTGAAAGATCTCTTTTCACATTACATGGAGGCATGGAAATCGTGGTACTCTGAGATTGCTGCTAAGAGACCATTACAAATTTTGTAA 1146 0.4293 MASSDPISSKHYTYNRKQKSLGLLCTNFLSLYNRDAVHLIGLDDAATRLGVERRRIYDIVNVLESIGVLSRKAKNQYTWKGFAAIPLTLRELKEDGQRENSNSLRGSTNDDMDKVSDDEDDEETQSNAATGSQNDKLNPKSTQPRSLKNENRREKSLALLTQNFVKLFVCSNVELISLDEAAKLLLGDAHNTSIMRTKVRRLYDIANVLSSMNLIEKTHTSDTRKPAFRWLGPEGKTWNESLHKSNQNDSRKRAFGSDITNISFERSKVELFTNGDLNSNPKKLKIENDIEPGQADENNLKQDTKQTSKSYQFGPFAPACVPRVGASGKHNGKQVHDWDGLVNAHSPQYQNEALKDLFSHYMEAWKSWYSEIAAKRPLQIL* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu3g2030 381 SMART E2F_TDP_2 152 232 IPR003316 GO:0005667|GO:0006355
Pvu3g2030 381 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Pvu3g2030 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 8 372 - -
Pvu3g2030 381 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Pvu3g2030 381 Pfam E2F/DP family winged-helix DNA-binding domain 154 232 IPR003316 GO:0005667|GO:0006355
Pvu3g2030 381 SUPERFAMILY "Winged helix" DNA-binding domain 15 79 IPR036390 -
Pvu3g2030 381 MobiDBLite consensus disorder prediction 126 145 - -
Pvu3g2030 381 MobiDBLite consensus disorder prediction 94 151 - -
Pvu3g2030 381 SUPERFAMILY "Winged helix" DNA-binding domain 154 233 IPR036390 -
Pvu3g2030 381 PANTHER TRANSCRIPTION FACTOR E2F 8 372 IPR015633 GO:0000978|GO:0006357
Pvu3g2030 381 Gene3D - 147 233 IPR036388 -
Pvu3g2030 381 Gene3D - 11 83 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu3g2030 Pvu-Chr3 40933175 40936648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu3g2030 11 378 E2F-DP Transcription Factor Family AT3G48160 53.784 2.83e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pvu3g2030 E2F_TDP 1.2e-20 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu3g2030 K09391 - gmx:100795252 652.129
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu3g2030 3 40933175 40936648 Pvu3g2030 3 40933175 40936648 ECH
Pvu3g2030 3 40933175 40936648 Pvu9g1886 9 26885942 26892635 PCT